Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2811 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGAGGGGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCCTTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTATTTCCCTCAGGGTCATAGCGAGCAGGTTGCTGCCACAACTAACAGAGAAGTTGATGGTCACATACCCAATTACCCGAGTTTGCCACCCCAGTTGGTTTGCCAACTTCACAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACGCTACAGCCGTTGACTCCGTATTTAGTTTCTCAACTGAAAATGCAGACAGCCTCGCAGTGTGGCAGCGGTGCAGGACAGCCAAAACGACACCTTCTTACAACAGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTTGTGGCTGGAGATTCTGTGCTTTTCATAtgGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCGAGCCAATCGGCCGCAAACTGTCATGCCATCCTCTGTTCTATCCAGTGATAGTATGCACATAGGGCTTCTTGCAGCTGCTGCTCATGCTGCAGCAACTAATAGCTGTTTTACAGTGTTCTATAATCCAAGGGCTAGTCCATCGGAGTTTGTCATACCGCTTTCAAAATATATCAAAGCTGTGTACCATACGCGTGTTTCTGTTGGTATGCGTTTTAGGATGCTTTTTGAGACTGAAGAATCAAGTGTTCGCAGGTACATGGGTACGATAACTGGCATAAGTGACCTGGATCCTGTTCGTTGGCCGAATTCTCATTGGCGTTCTGTTAAGGTTGGTTGGGACGAATCAACAGCAGGAGAGAGACAGCCACGGGTATCATTATGGGAAATTGAGCCTTTAACAACATTTCCAATGTATCCATCACTATTTCCCCTCAGATTGAAACGTCCATGGCATCCTGGCACCTCTTCTTTTCATGATGGCAGAGATGAAGCAAGTAATGGGCTAATGTGGCTGAGGGGTGGACCTGGAGACCAAGGTCTCAATTCCCTGAATTTTCAAGGTGCTGGTTTGTTGCCTTGGATGCAGCAGAGAATGGATCCAACTTTGCTTGGAACTGATCATAATCAGCAGTACCAAGCCATGTTTGCAGCTGGTTTGCAGAGCTTAGGGAGTGGAGATCTAATGAGACAACAAATGATGAATTTTCAACAGCCTTTCAATTATCTTCAACAATCAGGAAACCCCAATTCTCCTTTGCAGCTTCAGCAACCGCAAGCAATTCAGCAATCCATATCTTCTAATAATATACTACAGCCACAAGCCCAAGTATTGGCAGAGAACCTGTCTCAGCACCTCCTTCAGAAATCACACAACAATCGAGAAGACCAAACACCGCAGCAGCACACTTATCAAGATACGGTTTTACTTCAAAGTGATCAGCTCCATCAGAGGCAACACTCCGGTTTACCTTCACCATCATATTCAAAACCAGATTTCTTAGATTCAAGCATGAAGTTCTCTGCTTCAGTTTCGCCGGGACAAAACATGCTTGGTTCACTTTGTCCCGAAGGGAGTGGCAATATCTTGAATTTATCCAGAAGTGGTCAATCCATGCTGACTGAACAGTTACCCCAACAATCATGGGCCCCAAAGTTTACACCATTGCAGGTCAATGCTTTCAGCAACTCAATGTCACATGTGCAATACTCTGGAAAAGATACCGCAGTGGTGCCATCACATTGTAACTCAGACACTCAAAATCCTATTCTATTTGGTGTCAACATTGATTCATCTGGCCTTCTGCTCCCTACCACTGTCCCTCGTTATCCTACTACATCAGCTGATACTGATGCATCAGCAATGCCATTAGGGGAGTCTGGATTCCAGGCTCCTCTATATCCTTGCGTGCAAGATTCATCAGAGTTGTTGCATAGTGCAGGGCAAGTTGACCCTCAAAACCAGACACGAACATTTGTCAAGGTTTACAAATCAGGGTCAGTAGGGCGCTCACTCGACATCTCCCGGTTCAGCAGTTATCATGAACTGCGGGAGGAGTTGGCACAGATGTTTGGCATTGAGGGGAAATTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAATGATGTTCTTCTCCTTGGAGACGACCCGTGGGAATCATTTGTCAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGATATCCAGAAAATGGGAGAACAAGCCGTAGAATCCCTTGGTCCAAGTTCGGGACAAAGGCTTAATAGCACTGGTGCAGATTCTCATGAAATTGTTTCTGGACTTCCATCAATAGGCTCCCTCGAATACTGa 2346 0.4548 MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLVCQLHNVTMHADVETDEVYAQMTLQPLTPYLVSQLKMQTASQCGSGAGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFHDGRDEASNGLMWLRGGPGDQGLNSLNFQGAGLLPWMQQRMDPTLLGTDHNQQYQAMFAAGLQSLGSGDLMRQQMMNFQQPFNYLQQSGNPNSPLQLQQPQAIQQSISSNNILQPQAQVLAENLSQHLLQKSHNNREDQTPQQHTYQDTVLLQSDQLHQRQHSGLPSPSYSKPDFLDSSMKFSASVSPGQNMLGSLCPEGSGNILNLSRSGQSMLTEQLPQQSWAPKFTPLQVNAFSNSMSHVQYSGKDTAVVPSHCNSDTQNPILFGVNIDSSGLLLPTTVPRYPTTSADTDASAMPLGESGFQAPLYPCVQDSSELLHSAGQVDPQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLGPSSGQRLNSTGADSHEIVSGLPSIGSLEY 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2811 781 Gene3D - 651 744 - -
Ssu6g2811 781 PANTHER AUXIN RESPONSE FACTOR 1 107 - -
Ssu6g2811 781 Gene3D - 82 167 IPR015300 -
Ssu6g2811 781 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 124 766 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu6g2811 781 ProSiteProfiles PB1 domain profile. 655 739 IPR000270 GO:0005515
Ssu6g2811 781 MobiDBLite consensus disorder prediction 748 767 - -
Ssu6g2811 781 MobiDBLite consensus disorder prediction 406 425 - -
Ssu6g2811 781 SUPERFAMILY DNA-binding pseudobarrel domain 124 195 IPR015300 -
Ssu6g2811 781 Pfam B3 DNA binding domain 124 167 IPR003340 GO:0003677
Ssu6g2811 781 PANTHER AUXIN RESPONSE FACTOR 124 766 - -
Ssu6g2811 781 Pfam Auxin response factor 192 275 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu6g2811 781 Gene3D - 230 302 - -
Ssu6g2811 781 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 107 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu6g2811 781 SUPERFAMILY CAD & PB1 domains 653 729 - -
Ssu6g2811 781 Pfam AUX/IAA family 651 739 IPR033389 -
Ssu6g2811 781 MobiDBLite consensus disorder prediction 480 499 - -
Ssu6g2811 781 ProSiteProfiles B3 DNA-binding domain profile. 128 168 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2811 Ssu-Chr6 65295871 65305938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2811 124 752 B3 DNA Binding Superfamily AT5G37020 65.781 0.0 771
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu6g2811 AUX_IAA 8.3e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2811 - - gmx:100780393 1233.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2811 6 65295871 65305938 Ssu6g2811 6 65295871 65305938 ECH
Ssu9g1374 9 48237782 48243595 Ssu6g2811 6 65295871 65305938 PCT