Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2798 ATGCTCGCTGCTGCTGCTTCAGCTTCTCGGCACCTTCTTCAACGCGATGCCAGCATCGGTGCTTGCAGTGGCAGTGGCAATCGAGTTCGCTCTCTTTTAACTGCTTCTGCCATCACCACAACGAACCCAATTCGCATTAGAACATGTTACAGTTACGGTTATGGAATCAGTTTCAATAACCCCAAACACAGAACATGCCCAAGTTTACTTTTTGCTGTAAAGGGGTTCCTCTCTGATTCATCATCTTCTAATTCCCCACATGGCAGTGTTCCCAGGCCTTACTTACCACACCCTAGTTCTACGGTTGATGGGCGAGCATTGTTCTCAACTTCAACTAAAACTGATGATGGAAGCCAAAGCCAAAGCCAAAAGGCTGCTTCTCCCACTATTGCtaaaccaccaccaccacctggTGGGCAAGTTGCTGATGTGAAGATCCTTCGCACACTTGCCAGTTACTTGTGGATGAAAGACAATCTTGAATTTCGGTTTCGGGTTGTTGCTGCGTTGGGTTTGCTTGTTGGGGCTAAGGTTTTGAATGTTCAGGTCCCTTTCTTGTTCAAGCTTGCAATTGATTTGTTGACGGCTGCCACAGGGAGTGCTGGTGCTCTTGCTTCAAATTCAACTGGGCTGGCTCTTTTCGCAACCCCTGTGGCAGTGTTGATCGGATATGGAATTGCACGTTCAGGAGCTTCTGCTTTCAATGAACTGCGGTCTGCTGTATTTTCTAAGGTAGCACTACGAACAATTCGATTAGTATCAAGGAAGGTCTTCTCACATTTGCATGACCTTGACCTTCGGTATCATCTAAGCCGAGAAACTGGAGCATTAAGTAGAATAATTGATCGTGGTAGCCGTGCAATAAATTTCATTCTCTCCTCTATGGTGTTCAATGTAGTACCCACCATATTTGAGATATCTTTGGTATCAGGTATACTGGCCTACAAATTTGGAGCTCCCTTTGTGTTGATTACTTCCTTGTCAGTTGCTGCTTACGTTATATTTACGCTGACTATCACACAGTGGAGGACTAAGTTCAGGAAAGCCATGAATAAGGCTGATAATGCTGCTAGTACAAGGGTTATTGATTCACTTATTAATTATGAGActgtcaaatattttaataatgaagtTTATGAAGCTGATAACTATGACAAGTACCTAAAGAGGTATGAGGATGCTGCTCTGAAAACCCAACGCAGTCTTGCTTTGTTGAACTTTGgtcaaaatgttatatttagtaCTGCTCTTTCAACAGCAATGGTGCTGTGCTCTCATGGGATCATGGATGGCACAATGACTGTTGGTGATTTGGTAATGGTGAATGGGCTTCTCTTCCAACTATCTCTTCCACTCAATTTCCTTGGTAGTGTTTATCGTGAGACTGTACAGAGTCTAGTTGACATGAAGTCCATGTTTCAGTTACTTGAGGAAAGAGCAGACATTAGGGATAAAGAAAATGCAAAGCCTCTGAGATTCAACGGGGGGAGAATTCAATTTGAGAATGTACATTTTAGTTACCTCACAGAAAGAAAGATACTAGATGGAATATCACTTGTTGTGCCAGCTGGTAAAAGTGTTGCAATTGTAGGGACTAGTGGAAGTGGAAAATCAACCATTCTTAGATTGCTGTTCAGGTTCTTCGATCCTCATTCTGGAAGTATAAAGATAGATGATCAAGATATTCGGGAGGTAACCCTTGAGAGTTTGCGGAAGTCCATTGGTGTTGTTCCACAAGATACTGTACTTTTCAATGATacaatatttcataatattcaCTATGGTTGGCTTTCTGCAACAGAAGAGGAGGTCTATGCAGCTGCTCAGCGAGCAGCAATTCATGACACTATCATGAATTTTCCTGATAAATATTCAACTGTTGTGGGAGAGCGAGGGCTCAAGTTAAGCGGTGGTGAGAAGCAACGTGTTGCCCTAGCTCGTGCATTCTTAAAAGCACCTGCAATACTGTTGTGCGATGAAGCTACAAGTGCTCTTGACAGCACAACAGAAGCAGAGATTTTAAGTGCGTTAAAATCAGTAGCAAATAATCGGACTTCCATATTCATTGCTCACAGGCTTACCACTGCAATGCAGTGTGACGAGATCATTGTTTTGGAAAATGGGAAGGTGATTGAGCAAGGACCCCATGAAGTGCTATTATCAAAAGCAGGACGATATGCACAGCTGTGGGGACAGCAAAATAACACTATTGATGCAATTGATACAGCCATCAAGCTGGGAGCATAA 2247 0.4179 MLAAAASASRHLLQRDASIGACSGSGNRVRSLLTASAITTTNPIRIRTCYSYGYGISFNNPKHRTCPSLLFAVKGFLSDSSSSNSPHGSVPRPYLPHPSSTVDGRALFSTSTKTDDGSQSQSQKAASPTIAKPPPPPGGQVADVKILRTLASYLWMKDNLEFRFRVVAALGLLVGAKVLNVQVPFLFKLAIDLLTAATGSAGALASNSTGLALFATPVAVLIGYGIARSGASAFNELRSAVFSKVALRTIRLVSRKVFSHLHDLDLRYHLSRETGALSRIIDRGSRAINFILSSMVFNVVPTIFEISLVSGILAYKFGAPFVLITSLSVAAYVIFTLTITQWRTKFRKAMNKADNAASTRVIDSLINYETVKYFNNEVYEADNYDKYLKRYEDAALKTQRSLALLNFGQNVIFSTALSTAMVLCSHGIMDGTMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEERADIRDKENAKPLRFNGGRIQFENVHFSYLTERKILDGISLVVPAGKSVAIVGTSGSGKSTILRLLFRFFDPHSGSIKIDDQDIREVTLESLRKSIGVVPQDTVLFNDTIFHNIHYGWLSATEEEVYAAAQRAAIHDTIMNFPDKYSTVVGERGLKLSGGEKQRVALARAFLKAPAILLCDEATSALDSTTEAEILSALKSVANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGPHEVLLSKAGRYAQLWGQQNNTIDAIDTAIKLGA 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2798 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 733 IPR027417 -
Ssu6g2798 748 MobiDBLite consensus disorder prediction 103 128 - -
Ssu6g2798 748 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 498 732 IPR003439 GO:0005524
Ssu6g2798 748 CDD ABC_6TM_ATM1_ABCB7 169 472 - -
Ssu6g2798 748 Pfam ABC transporter 514 663 IPR003439 GO:0005524
Ssu6g2798 748 SUPERFAMILY ABC transporter transmembrane region 150 477 IPR036640 GO:0005524|GO:0016021
Ssu6g2798 748 ProSitePatterns ABC transporters family signature. 635 649 IPR017871 GO:0005524
Ssu6g2798 748 Gene3D - 489 743 IPR027417 -
Ssu6g2798 748 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 72 738 IPR039421 -
Ssu6g2798 748 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 167 464 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu6g2798 748 MobiDBLite consensus disorder prediction 82 140 - -
Ssu6g2798 748 SMART AAA_5 523 709 IPR003593 -
Ssu6g2798 748 CDD ABCC_ATM1_transporter 498 733 - -
Ssu6g2798 748 PANTHER BNAA10G12020D PROTEIN 72 738 - -
Ssu6g2798 748 Gene3D ABC transporter type 1, transmembrane domain 153 488 IPR036640 GO:0005524|GO:0016021
Ssu6g2798 748 Pfam ABC transporter transmembrane region 169 451 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2798 Ssu-Chr6 64950121 65007897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2798 334 734 Calmodulin-binding Proteins AT2G36910 36.650 1.85e-63 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2798 K05662 - gmx:100779975 1317.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2798 6 64950121 65007897 Ssu6g2798 6 64950121 65007897 ECH