Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2790 ATGGAGATTTGCCTTTCCATTATAGCAAAGATTGCAGAATATGCAGTGGATCCAATTTTACACCATGCTCGATACTTGTGCTGTTTCAACAACTTTGCTGGGAATCTTACAAATGCCAAAGAAGAATTGGAATTGACCCAAGACAGCGTGAAGGAACAAGTTAGACAAGCCACTAGCAGGACTGAAAAAATTGAGCCAACTGTTGAGAAGTGGCTGAAAGATGTTGAGAAAGTCTTAGAAGAAGTGCAGAATTTGGAAGGAAGAATTTCGGAAGTAAGCAAGAGCTATTTCAGAAGGCGATGCCAATATTTTCTTGCAAAAGAAATAGCaagtaaaacagaaaaaatgaCCCTCCTCAATCGTAATAGCAAGTTTGAGCCATTTTCACGACATACTGAACTTCCAGGCATGAAGTACTATTCCTCCAAAGGTTTTGTCCTTTTCGAATCAACAGAATCAACTTACAAGAAACTTTTGGAAGCATTAAAGGATAAAAGTGTTAGCATGATTGGACTAATTGGAATAGGAGGCTTGGGAAAAACTACTTTGGCGAAAGAAATGGGTAAGAAAGCTGAGGAGTTAAAACTTTTTGAGAAGGTTGTCATGGCAACGGTCTCTCAAACTCCAAATATCAGAAGCATCCAAGCACAAATTGCTGATAAATTGGGTTTCAAATTAGAGGAAGAATCAGACGAAGGTAGAGCACAAAGACTATCACAAAGAATAAGGGAATGCACAACTCTTCTAATCTTGGATGATGTATGGGAAAAGCTTAACTTTGAAGCTTTAGGCATTCCATTCCATGAAAATAACAAGGGTTGTGGAGTACTCCTAACAACTCGGAGTAGAGAAGTATGCACGTCTATGCAATGCCAAAGTATAATTGAGCTCAATCTCTTAACTAGCGAGGAAGCTTGGAGTTTGTTCACATCGAATGCTGAGATAAATGATGACTCCCCAGATGCTTTGAAAGTTGTGGCAAGGAAAATTGTTAATGAATGTAAGGGATTGCCTATTGCAATTGTGACGGTGGGAAGCACGCTAAGGGAGAAAACTTTTGAAGAGTGGAAGTTAGCATTATCAAGACTGGAAGATTCAATACCACTGGATATTCCAAATGGCTTAGGAAGTCCTCATGTCTGTCTCAAATTAAGTTACgataatttgaaaaatcaattagCCAAGTCCTTGTTATTGCTGTGTTCTATATTTCCAGAGGATTCTGAAATTCATTTGGAAGATTTATTTCGATTTGGAAAGGGACTGGGCCTAACTAGGACTTTTGGAACAATGGAGAAAGGAAGAAGGGAGATGCATGTAGCTGTTAACATCCTCAGGGATTCTTGTTTGTTGCTGCATGCCAGTAATaaagaaagggtgaaaatgcATGACATGGTTCGTGATGTAGCCTTGTGGATAGCATCTACAAGCGGTCAAGCAATTTTGGCAAGTACTGCCATGAATCCAAGAATGTTGGTAGAGGATGAATCCATAAAAGATAAGAGAGCAATCTCCTTATGGGATTTGGAAAATGGTCAGCTTCCTGATGATCAATTGAATTGTCCAGCACTTGAAATTTTCTTGCTTCATTCTCCAAAGGTTGGCTTTGAAGTACCAAATGCGTGTCTTGAAAGGTTGAAAATGCTTAAAATCCTTGCATTCTTAGGATATGGCTATGAGTGGATAGAATATTCACcgttgaaaagaaatataactttGTCACTGCCACAGTCAATTGAGTCATTAGAAAATCTTCATACTCTGTGCTTGAGGGGTTATAAATTAGGTGACATCTCCATTTTGGAAAGCCTACAAGCACTTGAGATTCTTGACCTGCGTGGTTCTTCTTTTGAAGCATTGCCTAAAGGAATTGTAgcattaaagaaattgaagctTCTGGATTTGTACAATTGTTGGGTTGAGAAAAATAATGCTTGTGAGGTTATAGGGAGATGTTTGCAGCTAGAGGaattgtatttgtatttattatcatCTAAAGAGGAGTTTCCACATAGTGTCTCTTTCTTAAGATTGCAGAGGTATGTTATAGTACAATTTCCTCCTGATTCTAGTTATTGGCATCCTGAGTACGTTTTGGAAGAGCATAGACCATCTAGAGCTTTATGCATAGATGGTTTTAATGTCTCTGCTCAAAGTTTTATATCATTACCAATCAAGGATCTCTTTCGAAGAGTAGAGTACCTTCATTTGAGGGACCTTCGGGGAGGTTACAAAAATGTAATCCCATCCATGGATCCACAAGGCATGAATCAGTTGATTGTCCTAATCCTCGATGCTTGTGGAGAGATAGAATGCCTCTTTGATAGTATTATCACTACCAATACCAATGTTGATCTGCTTCAGACCGAAGTTGTGTTCTCGGGCCTGGTTACCTTAAGGCTGGGTCGGATGCATAGCCTTCAAGAAGTGTTTCGTGACCCCTCTTCGCGATGCTCTCTCAAAAATTTACAAGAGTTAAAGTTAAGTTATTGTAATGAATTGTACAGCATATCCTTTCCCAGGAACTCAAAGCTATGCAATCTCAAGGAGATGAGCATACAAGGCTGCCCAATGCTAACTTCTCTGTTCACTGCCATCCATTGTCCAAACTCTAGCGGTGCTGGAGGTTCTAGAAATATCTGA 2643 0.3802 MEICLSIIAKIAEYAVDPILHHARYLCCFNNFAGNLTNAKEELELTQDSVKEQVRQATSRTEKIEPTVEKWLKDVEKVLEEVQNLEGRISEVSKSYFRRRCQYFLAKEIASKTEKMTLLNRNSKFEPFSRHTELPGMKYYSSKGFVLFESTESTYKKLLEALKDKSVSMIGLIGIGGLGKTTLAKEMGKKAEELKLFEKVVMATVSQTPNIRSIQAQIADKLGFKLEEESDEGRAQRLSQRIRECTTLLILDDVWEKLNFEALGIPFHENNKGCGVLLTTRSREVCTSMQCQSIIELNLLTSEEAWSLFTSNAEINDDSPDALKVVARKIVNECKGLPIAIVTVGSTLREKTFEEWKLALSRLEDSIPLDIPNGLGSPHVCLKLSYDNLKNQLAKSLLLLCSIFPEDSEIHLEDLFRFGKGLGLTRTFGTMEKGRREMHVAVNILRDSCLLLHASNKERVKMHDMVRDVALWIASTSGQAILASTAMNPRMLVEDESIKDKRAISLWDLENGQLPDDQLNCPALEIFLLHSPKVGFEVPNACLERLKMLKILAFLGYGYEWIEYSPLKRNITLSLPQSIESLENLHTLCLRGYKLGDISILESLQALEILDLRGSSFEALPKGIVALKKLKLLDLYNCWVEKNNACEVIGRCLQLEELYLYLLSSKEEFPHSVSFLRLQRYVIVQFPPDSSYWHPEYVLEEHRPSRALCIDGFNVSAQSFISLPIKDLFRRVEYLHLRDLRGGYKNVIPSMDPQGMNQLIVLILDACGEIECLFDSIITTNTNVDLLQTEVVFSGLVTLRLGRMHSLQEVFRDPSSRCSLKNLQELKLSYCNELYSISFPRNSKLCNLKEMSIQGCPMLTSLFTAIHCPNSSGAGGSRNI 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2790 880 PANTHER DISEASE RESISTANCE PROTEIN RP 6 768 IPR044974 GO:0006952
Ssu6g2790 880 Gene3D - 137 296 IPR027417 -
Ssu6g2790 880 SUPERFAMILY L domain-like 461 869 - -
Ssu6g2790 880 PRINTS Disease resistance protein signature 241 255 - -
Ssu6g2790 880 PRINTS Disease resistance protein signature 334 348 - -
Ssu6g2790 880 PRINTS Disease resistance protein signature 169 184 - -
Ssu6g2790 880 PRINTS Disease resistance protein signature 818 834 - -
Ssu6g2790 880 Coils Coil 68 95 - -
Ssu6g2790 880 Gene3D Ribonuclease Inhibitor 706 871 IPR032675 -
Ssu6g2790 880 Gene3D Ribonuclease Inhibitor 474 701 IPR032675 -
Ssu6g2790 880 Pfam NB-ARC domain 155 366 IPR002182 GO:0043531
Ssu6g2790 880 Gene3D - 299 385 IPR042197 -
Ssu6g2790 880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 400 IPR027417 -
Ssu6g2790 880 Gene3D - 386 471 IPR036388 -
Ssu6g2790 880 PANTHER DISEASE RESISTANCE PROTEIN-RELATED 6 768 - -
Ssu6g2790 880 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2790 Ssu-Chr6 64816728 64819370 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2790 155 638 WRKY Transcription Factor Family AT5G45050 22.099 1.61e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2790 - - gmx:102664497 1202.19