Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2788 ATGATCAGTTCAGGAGAGACATTCAAGAGGCTTGGTGAGTTCTACGTTCCTGGGATGTATCTTTCAAAGGGTTGTAGGTGTGAAGTTGTTCTCTGTTTGTGGTTCTGCTGCTATTTCCTATTGGCTGCTGGTCAGAGCACTGACCCCACAGAAGTTGACACATTGAGAACCATAAAGAGAAGTTTGATTGATATTAATGGAAATTTGAGCAGCTGGGATCGTGGAGACCCATGTACATCTAACTGGACAGGGGTTATATGCAATACAACATTAGTCGATGGCTATCTACATGTTCTACAATTGCAACTgctgaatttgaatttgtctGGAACTTTGGCACCAGAGATTGGCCGCTTATCTTATCTGAACATATTGGACTTTATGTGGAATAACATAAGTGGGAGTATACCGAAGGAGATTGGCAATATCACAACGTTGCAACTCTTACTCCTGAGTGGAAATAAACTAACAGGTCATCTGCCGGAAGAGCTTGGCCATCTTCCAGTCTTGAACAGAATACAAATTGATGAGAACCATATTACAGGATCCATACCATTATCATTTGCAAACCTGAACAACACACAACACTTTCTTCTTGACAACAATAAATTTACAGGATATCTCCCCTCCGAGCTCTCTCAGATGCCAAGATTAAGGATACTTCAACTTGATAACAATAACTTCAGTGGAAATAGCATTCCAGAATCTTATGGCAACATGTCAAAATTGGTGAAATTGAGCCTTAGGAACTGCAGCTTGCAAGGACCAATTCCTGATTTCAGCAAGATACCACACCTTGCTTATCTTGACCTCAGTTTCAATCAGTTGAATGAATCAATTCCTACCAATAGGCTGTCTGACAATATCACAACCATTGACTTATCAAACAACAAGCTTACTGGAACAATTCCATCCAAATTTTCTGTTCTTCCGCATCTTCAGAAATTGTCAATTGCAAACAATTCATTGAGTGGCAATGTTTCTTCCACCATTTGGCAGGACAGGAATTTAAAAGGAGCAGAACACCTTATCTTGGACATGAAAAATAATCTACTTACAAGTATATCAGGCACTACAAATCTTCCTCCAAATGTCACACTCATGCTTGACGGAAATCCTGTATGCTTGAATAATAACACCTTAGTTCAGTTCTGTGGACCTGAAAGCGACAATGGCTTGAATGGAAACTCCAGTGTTGATTGTCCCAATCAAGCATGCCCCCCTCCTTATGAATACGCTGTGCAGTGTTTCTGTGCTGTCCCATTGGTTGTTCATTATCGGTTGAAAAGTCCAGGATTTTCAGATTTCCGTGCATACCAGACATCATTTGAGAGTTTCCTGACAGATGGTCTTAATGTACCTTTTAATCAGCTATTCATTGAGCGTTTTGCATGGGAAGAAGGGCCTCGGTTGAGAATGAACTTGAAGATTTTTCCTGAATATATTGACAATAGAAATGCTCATGTTTTCAACACAAGTGAGGTTATTCGGATCAGAGACTTGTTCAGAGAATGGAACATAGATGCCAATGACTTGTTCGGGCCTTATGAACTTCTGGACTTCATTAACAGGGATGTGATTACCCCCTCTCCAAGTTTAGGGATAAGCAAAGGTGCACTGGCTGGAATAATCTTAGGTGCAATTGCCTCTGCAGTTACATTATCTGCAATTGTTTCCATTCTTATATTGAGAATACGCTTGAGAGATTATCGTGTACTTTCCAAACGGCGTAATGCATCTAGGATCTTGATAAATGTTGATGGTGTAAGATCATTTGATTACAAAGAAATGGCCTTGGCTACGAACAATTTTAGTGAGTCTGCTCAAATTGGAGAAGGGGGCTATGGGAAGGTTTATAAAGGTCATCTTCCTGATGGCACTGTTGTTGCCATAAAACGTGCACAGGAGGGTTCATTGCAAGGTGAGAGGGAGTTCCTTACAGAAATAGAATTGCTATCAAGGTTACACCATCGCAACCTTGTGTCTCTGATTGGATACTGTGATGAAGAGGGCGAACAgATGTTGGTTTATGAATATATGCCAAATGGAACGCTAAGGGATCACCTTTCTGCTTATTCAAAAGAACCTCTTAGTTTTACCATGAGGTTGAGGATTGCTCTAGGATCAGCTAAAGGTCTTTTATACCTACACACAGAAGCTAATCCTCCAGTATTCCACCGAGATGTCAAGGCCAGCAATATATTATTGGACTCCAGGTACATAGCAAAAGTTGCTGATTTTGGACTTTCACGACTTGCCCCAGTTCCAGATATTGAAGGAAATGTACCTGGTCATGTATCAACAGTGGTAAAGGGGACCCCGGGTTATCTTGATCCAGAGTACTTCTTAACTCGCAATTTGACTGACAAGAGTGATGTTTATAGTCTTGGTGTTGTATTTCTGGAACTTATGACTGGGAGGCCACCAATCTTTCATggtgaaaatattattagacaGgtTAATATGGCATACCGATCTGGTGGAATATCTTTGGTTGTTGATAAACGTATTGAGTCTTATCCTTCTGAGTATGCGGAGAAATTTTTGACTTTGGCCTTAAAGTGTTGCAAAGATGCACCAGATGAGCGGCCTAAAATGTCAGAAGTGGCTAGAGAGCTTGAATACATCTGTTCTATGTTACCTGAGTCCGATACCAAAGGAGCCGAATATGTTACAAGTGATTCTTCTGGTACAATATTCAGTTCACAACCTTCATCATCTACTATAAAGACTCCTTTTATTTCAGGAGATGTGTCAGGTAGTGACCTTGTCAGTGGAAGTATACCAACCATCAAGCCAAGATAG 2805 0.4011 MISSGETFKRLGEFYVPGMYLSKGCRCEVVLCLWFCCYFLLAAGQSTDPTEVDTLRTIKRSLIDINGNLSSWDRGDPCTSNWTGVICNTTLVDGYLHVLQLQLLNLNLSGTLAPEIGRLSYLNILDFMWNNISGSIPKEIGNITTLQLLLLSGNKLTGHLPEELGHLPVLNRIQIDENHITGSIPLSFANLNNTQHFLLDNNKFTGYLPSELSQMPRLRILQLDNNNFSGNSIPESYGNMSKLVKLSLRNCSLQGPIPDFSKIPHLAYLDLSFNQLNESIPTNRLSDNITTIDLSNNKLTGTIPSKFSVLPHLQKLSIANNSLSGNVSSTIWQDRNLKGAEHLILDMKNNLLTSISGTTNLPPNVTLMLDGNPVCLNNNTLVQFCGPESDNGLNGNSSVDCPNQACPPPYEYAVQCFCAVPLVVHYRLKSPGFSDFRAYQTSFESFLTDGLNVPFNQLFIERFAWEEGPRLRMNLKIFPEYIDNRNAHVFNTSEVIRIRDLFREWNIDANDLFGPYELLDFINRDVITPSPSLGISKGALAGIILGAIASAVTLSAIVSILILRIRLRDYRVLSKRRNASRILINVDGVRSFDYKEMALATNNFSESAQIGEGGYGKVYKGHLPDGTVVAIKRAQEGSLQGEREFLTEIELLSRLHHRNLVSLIGYCDEEGEQMLVYEYMPNGTLRDHLSAYSKEPLSFTMRLRIALGSAKGLLYLHTEANPPVFHRDVKASNILLDSRYIAKVADFGLSRLAPVPDIEGNVPGHVSTVVKGTPGYLDPEYFLTRNLTDKSDVYSLGVVFLELMTGRPPIFHGENIIRQVNMAYRSGGISLVVDKRIESYPSEYAEKFLTLALKCCKDAPDERPKMSEVARELEYICSMLPESDTKGAEYVTSDSSGTIFSSQPSSSTIKTPFISGDVSGSDLVSGSIPTIKPR 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2788 934 Pfam Leucine rich repeat 170 228 IPR001611 GO:0005515
Ssu6g2788 934 MobiDBLite consensus disorder prediction 888 934 - -
Ssu6g2788 934 ProSitePatterns Protein kinases ATP-binding region signature. 610 632 IPR017441 GO:0005524
Ssu6g2788 934 ProSiteProfiles Protein kinase domain profile. 604 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2788 934 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 30 910 - -
Ssu6g2788 934 Gene3D Ribonuclease Inhibitor 208 284 IPR032675 -
Ssu6g2788 934 MobiDBLite consensus disorder prediction 888 926 - -
Ssu6g2788 934 Gene3D Ribonuclease Inhibitor 49 207 IPR032675 -
Ssu6g2788 934 SMART serkin_6 604 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2788 934 Pfam Protein kinase domain 605 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2788 934 Gene3D Phosphorylase Kinase; domain 1 575 679 - -
Ssu6g2788 934 ProSitePatterns Serine/Threonine protein kinases active-site signature. 724 736 IPR008271 GO:0004672|GO:0006468
Ssu6g2788 934 SUPERFAMILY L domain-like 63 394 - -
Ssu6g2788 934 Gene3D Transferase(Phosphotransferase) domain 1 680 893 - -
Ssu6g2788 934 CDD STKc_IRAK 610 874 - -
Ssu6g2788 934 Gene3D Ribonuclease Inhibitor 285 375 IPR032675 -
Ssu6g2788 934 SUPERFAMILY Protein kinase-like (PK-like) 589 890 IPR011009 -
Ssu6g2788 934 Pfam Leucine rich repeat N-terminal domain 49 88 IPR013210 -
Ssu6g2788 934 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 30 910 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2788 Ssu-Chr6 64689643 64738161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2788 36 886 Receptor kinase-like Gene Family AT5G01950 55.767 0.0 917
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Ssu6g2788 Pkinase 9.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2788 - - gmx:100801035 1499.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2788 6 64689643 64738161 Ssu6g2788 6 64689643 64738161 ECH
Ssu9g1330 9 47688625 47701493 Ssu6g2788 6 64689643 64738161 PCT