Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2786 ATGGCAGAGGCTACTTTGAATTCAAGTGTCAATATCTTATACATTACAACCAAAAATCTCTCCATGAAGTTCTACTGCCCTCAAGTGCATCGTTTCCTGTTAATCATTGTTATTCTTTGTCCTCTGGTTATTGCTGACTTAAGTTCTGATAAGCAAGCCCTTCTTGATTTTGCTGCTGCTGTCCCCCATCGCCGTAACCTTAAGTGGGATTCAGCTACCCCAATCTGTGCATCTTGGGTAGGCATCACTTGCAATCCAAATGGCACTCGTGTTGTTTCTGTCCGGCTTCCTGGAATTGGACTAGTGGGCACCATCCCTGCCAATACACTTGGAAAGATTGACTCACTGAAAAATATCAGCCTCCGCTCCAACCTACTGAGTGGAAGTCTTCCTCCTGATATTACTTCTCTTCCTTCTCTACAAAATCTCTACCTTCAGCATAATAACCTTTCCGGTAATATACCTACCTCATTGTCCACCCACCTCAATGTACTTGATTTGTCATACAATTCCTTCACCGGTGCTATTCCGAAGACATTACTAAACTTAACACAACTAACTAGATTGAACCTCCAGAACAACTCCCTATCTGGACATATACCAGATCTCAATGTCACTAAGCTCCGGCACTTGAATTTAAGCAACAACCATTTGAATGGCTCTATCCCTGCTGCTCTTCAGATTTTCCCGAATTCTTCCTTTGAGGGTAACTCTCTATGTGGGTTACCTCTAAAGTCATGCCCTGTAGTCCCCCCTCCACCTCCTCCCTCGTCGACTCCTGCCCCGCCATCAACTCCTGCAAAACAAGGCTCCAAACATAAACTGAGTAAGGTAGCTATCATTGCAATTGCAGTTGGTGGGGGTGTGTTATTGCTTTTTGTAGCTCTCGTCATTGTTCTTTgctgtttaaagaaaaaagatgatgGAAGCCCCAGAGCAACTAAAGGCAAGGCTCCTAGTGGTGGGAGAAGTGAGAAGCCAAAAGAAGAGTTTGGAAGTGGGGTACAAGAACCTGAGAAAAACAAGTTGGTTTTCTTTGAGGgcagttcttataattttgatcTTGAGGATTTGCTGAGAGCTTCAGCTGAAGTTCTTGGAAAGGGTAGTTATGGTACTGCATACAAGGCTATATTGGAGGAGTCAACAACAGTTGTAGTGAAAAGGTTGAAGGAAGTTGTGGTAGGCAAAAGGGAATTTGAACAACAGATGGAGATTGTGGGAAGGGTTGGACAGCACCCAAATGTTGTGCCACTTCGtgcttattattattctaaGGATGAGAAGCTTTTGGTTTATGACTACATCCCAAGTGGCAATCTATCTACGCTCTTGCATGGTAACAGGGCCAGTGGAAGAACTCCATTAGATTGGAACTCCCGAGTAAAAATCTCAATTGGAATTGCCAGAGGAATTGCTCACATACATTCCGTTGGCGGTCCAAAATTCACTCACGGAAATGTCAAATCCTCGAATGTCCTCCTCAACCAAGACAACGATGGCTGCATTTCTGATTTTGGCCTGACCCCGCTTATGAATGTTCCTGCAACTCCTTCTAGAGCCGCAGGATATCGCGCTCCTGAGGTGATTGAAACCCGAAAGCACACTCACAAGTCAGATGTGTACAGTTTTGGCGTCCTCCTTCTGGAAATGCTTACCGGGAAAGCGCCGCAGCAGTCTCCGGGACGTGATGACATGGTTGATCTCCCTAGGTGGGTTCAGTCTGTCGTTAGGGAGGAGTGGACGGCTGAGGTTTTTGATGTGGAGCTAATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAAATGTTGCAAATTGCCATGGCCTGTGTGGCAAAGGTTCCAGATATGAGGCCTAGCATGGAGGAAGTAGTGAGAATGATTGAAGAGATCCGGCAATCCGACTCGGAAAACCGGCCATCTTCTGAAGAGAATAGATCCAAGGAGGAATCAACTGCTCAAACTCCATGA 1971 0.4429 MAEATLNSSVNILYITTKNLSMKFYCPQVHRFLLIIVILCPLVIADLSSDKQALLDFAAAVPHRRNLKWDSATPICASWVGITCNPNGTRVVSVRLPGIGLVGTIPANTLGKIDSLKNISLRSNLLSGSLPPDITSLPSLQNLYLQHNNLSGNIPTSLSTHLNVLDLSYNSFTGAIPKTLLNLTQLTRLNLQNNSLSGHIPDLNVTKLRHLNLSNNHLNGSIPAALQIFPNSSFEGNSLCGLPLKSCPVVPPPPPPSSTPAPPSTPAKQGSKHKLSKVAIIAIAVGGGVLLLFVALVIVLCCLKKKDDGSPRATKGKAPSGGRSEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESTTVVVKRLKEVVVGKREFEQQMEIVGRVGQHPNVVPLRAYYYSKDEKLLVYDYIPSGNLSTLLHGNRASGRTPLDWNSRVKISIGIARGIAHIHSVGGPKFTHGNVKSSNVLLNQDNDGCISDFGLTPLMNVPATPSRAAGYRAPEVIETRKHTHKSDVYSFGVLLLEMLTGKAPQQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKVPDMRPSMEEVVRMIEEIRQSDSENRPSSEENRSKEESTAQTP 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2786 656 Gene3D Ribonuclease Inhibitor 49 160 IPR032675 -
Ssu6g2786 656 Gene3D Transferase(Phosphotransferase) domain 1 436 655 - -
Ssu6g2786 656 ProSitePatterns Protein kinases ATP-binding region signature. 366 397 IPR017441 GO:0005524
Ssu6g2786 656 MobiDBLite consensus disorder prediction 629 656 - -
Ssu6g2786 656 SUPERFAMILY Protein kinase-like (PK-like) 364 639 IPR011009 -
Ssu6g2786 656 MobiDBLite consensus disorder prediction 629 650 - -
Ssu6g2786 656 CDD STKc_IRAK 366 631 - -
Ssu6g2786 656 ProSiteProfiles Leucine-rich repeat profile. 185 207 IPR001611 GO:0005515
Ssu6g2786 656 ProSiteProfiles Protein kinase domain profile. 360 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2786 656 SUPERFAMILY L domain-like 60 231 - -
Ssu6g2786 656 MobiDBLite consensus disorder prediction 308 335 - -
Ssu6g2786 656 Pfam Leucine rich repeat N-terminal domain 48 85 IPR013210 -
Ssu6g2786 656 PANTHER LRR RECEPTOR-LIKE KINASE 15 656 - -
Ssu6g2786 656 MobiDBLite consensus disorder prediction 251 270 - -
Ssu6g2786 656 PANTHER OS05G0588300 PROTEIN 15 656 - -
Ssu6g2786 656 Pfam Protein kinase domain 363 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2786 656 Gene3D Phosphorylase Kinase; domain 1 328 435 - -
Ssu6g2786 656 Gene3D Ribonuclease Inhibitor 161 248 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2786 Ssu-Chr6 64606387 64610256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2786 32 654 Receptor kinase-like Gene Family AT5G58300 69.586 0.0 878
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu6g2786 Pkinase 6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2786 - - gmx:100818344 1098.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2786 6 64606387 64610256 Ssu6g2786 6 64606387 64610256 ECH
Ssu9g1324 9 47568952 47571186 Ssu6g2786 6 64606387 64610256 PCT