Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2784 ATGTCCGTACACTCGGCACTGAAGCTCCACCCCATGAACCCCGCCACCGCAAGTTCCCATTTTGACGACCACCCACCATGCAAAACGAAGACCAAAACCCGAAGGAAGCTCGTTCGGATCATCCTCACCGACCACGACGCCACAGATTCTGACTCCTCCTCCGACGAGgaagaagaacaacaacaaaacaacccAACAAAAAGAAGAGTGAAGAGAGAAATCACCCAGATCAACATGCAAATTCCTCTCTCAGataattccttttcttcttcttattcttctGCTTCTGCTTCCACTTCTTGTTCCTCAGAACAAAACCCACCATCAAACAAGTGCAGGAGACCCAAAAACCCGCCACCGTCCGCCGCCTCGGCCCACCGCCGCAACAAGTTCCGCGGCGTCCGGCAGCGGCCGTGGGGGCGGTGGGCCGCCGAGATCCGCGACCCCACCCGCGGGAAACGCCTCTGGCTCGGAACCTTCGACACGGCGGAGGAAGCCGCCACGGAGTACGACAAAGCCGCCGTGAAACTCAAGGGTCCAAACGCCGTCACCAACTTCCCCCTCTCGCCGCCGCCTACGGCGGCGCCCCCAGTCATCGCCGTCGACAGCCTGAGCACCGAAGGCGGCGCGTCGTACTCCGACCTGGTGGCCTCGCCGACGTCCGTGCTGGCCTACGACTGTGACTCGACGCCGTTCGATGGTTTCCGTTACGGCGACGTGGACGCGTTCGGGTTCCGCATCGACGCGCCGTTAAGTTTGTCGGACGTTAACCTTACGCTGACGTGTCATCACGGGAAGGAGGAAGAGGCGCTCGGTGAATTCGACCTGGACGAGTTCATCACGTGGCCGTACTAA 855 0.5731 MSVHSALKLHPMNPATASSHFDDHPPCKTKTKTRRKLVRIILTDHDATDSDSSSDEEEEQQQNNPTKRRVKREITQINMQIPLSDNSFSSSYSSASASTSCSSEQNPPSNKCRRPKNPPPSAASAHRRNKFRGVRQRPWGRWAAEIRDPTRGKRLWLGTFDTAEEAATEYDKAAVKLKGPNAVTNFPLSPPPTAAPPVIAVDSLSTEGGASYSDLVASPTSVLAYDCDSTPFDGFRYGDVDAFGFRIDAPLSLSDVNLTLTCHHGKEEEALGEFDLDEFITWPY 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2784 284 ProSiteProfiles AP2/ERF domain profile. 130 187 IPR001471 GO:0003700|GO:0006355
Ssu6g2784 284 MobiDBLite consensus disorder prediction 77 111 - -
Ssu6g2784 284 SUPERFAMILY DNA-binding domain 130 189 IPR016177 GO:0003677
Ssu6g2784 284 Pfam AP2 domain 130 179 IPR001471 GO:0003700|GO:0006355
Ssu6g2784 284 PRINTS Ethylene responsive element binding protein signature 131 142 IPR001471 GO:0003700|GO:0006355
Ssu6g2784 284 PRINTS Ethylene responsive element binding protein signature 153 169 IPR001471 GO:0003700|GO:0006355
Ssu6g2784 284 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 29 279 - -
Ssu6g2784 284 MobiDBLite consensus disorder prediction 60 74 - -
Ssu6g2784 284 CDD AP2 130 189 IPR001471 GO:0003700|GO:0006355
Ssu6g2784 284 SMART rav1_2 130 193 IPR001471 GO:0003700|GO:0006355
Ssu6g2784 284 Gene3D AP2/ERF domain 129 189 IPR036955 GO:0003700|GO:0006355
Ssu6g2784 284 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 29 279 - -
Ssu6g2784 284 MobiDBLite consensus disorder prediction 1 135 - -
Ssu6g2784 284 PIRSF PTI6 7 284 IPR017392 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2784 Ssu-Chr6 64569523 64570377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2784 28 225 AP2-EREBP Transcription Factor Family AT4G27950 43.415 7.28e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu6g2784 AP2 3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2784 K13434 - gmx:100800489 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1321 9 47556386 47557204 Ssu6g2784 6 64569523 64570377 PCT