Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2780 ATGGATCTCCTCCTCCTGGAGAAGGCTCTGCTGGGCCTCTTCCTCGCGGCGGTGGTCGCCATTGCGGTCTCCAAGCTCCGCGGCAGGCGCTTCAAGCTGCCCCCCGGCCCCCTCCCGGTGCCGTTGTTCGGGAACTGGCTCCAGGTCGGCGACGACCTCAACCACCGCAACCTCACCGACCTCGCCAAGCGCTTCGGCGACATCTTCCTCCTCCGCATGGGGCAGCGCAACCTCGTGGTGGTGTCCTCCCCGGAGCTCGCCAAGGAGGTCCTCCACACGCAGGGCGTCGAGTTCGGCTCCCGCACGCGCAACGTCGTCTTCGACATCTTCACCGGCGAGGGCCAGGACATGGTCTTCACCGTCTACGGCGAGCACTGGCGCAAGATGCGCCGCATCATGACCGTCCCCTTCTTCACCAACAAGGTCGTCCAGCAGTACCGCCTCGGCTGGGAGGCCGAGGCCGCCGCCGTCGTCGAGGACGTCGGGCGCAACCCCGACGCCGCCGCCGCCGGGATCGTCATTCGCCGCCGCCTGCAGCTCATGATGTACAACAACATGTACAGGATCATGTTCGATCGGAGGTTCGAGAGCGAGGAGGACCCGCTGTTCCAGAGGCTCAGGACGCTGAATGGGGAAAGGAGTCGCTTGGCTCAGAGTTTTGAGTATAACTATGGGGATTTTATTCCCATTTTGAGGCCGTTCTTGAAGGGTTACTTGAGGATTTGTAAGGAGGTTAAAGATACCAGGCTGAAGCTCTTCAAGGATTACTTCGTTGACGAGAGGAAGAAGCTCGGAAGCACCAAGAGCACTAACAACGAAGGGCTTAAATGCGCTATTGACCACATTTTGGATGCCCAGAGGAAGGGCGAGATCAACGAAGACAACGTCCTTTACATTGTTGAGAACATCAACGTTGCCGCAATTGAAACAACCCTATGGTCAATTGAATGGGGCATTGCTGAGCTTGTGAACCACCCAGAGATCCAGCAGAAGGTAAGGGAAGAGATTGACCGAGTTCTTGGACCAGGACACCAGGTGACTGAGCCAGATATCCAGAAGCTCCCATACCTTCAAGCAGTGGTCAAGGAAACACTTCGCCTTAGAATGGCAATCCCCCTCCTTGTCCCACACATGAACCTCCAGGATGCAAAGCTTGGTGGCTATGACATCCCAGCTGAGAGTAAGATTTTGGTCAATGCATGGTGGCTTGCCAACAACCCTGCCCACTGGAAAAAGCCAGAGGAGTTCAGGCCTGAAAGGTTCTTCGAAGAGGAGTCCCATGTTGAAGCCAATGGCAATGACTTTAGGTACCTTCCCTTTGGTGTTGGCAGAAGGAGCTGCCCTGGAATCATTCTTGCATTGCCCATTCTTGGCATTACTTTGGGTCGTTTGGTCCAAAACTTTGAGCTCTTGCCTCCTCCTGGCCAGTCCAAGATTGACACTAGTGAGAAAGGAGGGCAGTTTAGCTTGCACATACTGAAGCATTCCACCATTGTTGCAAAGCCAATATCATTTTAG 1518 0.556 MDLLLLEKALLGLFLAAVVAIAVSKLRGRRFKLPPGPLPVPLFGNWLQVGDDLNHRNLTDLAKRFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGEGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRLGWEAEAAAVVEDVGRNPDAAAAGIVIRRRLQLMMYNNMYRIMFDRRFESEEDPLFQRLRTLNGERSRLAQSFEYNYGDFIPILRPFLKGYLRICKEVKDTRLKLFKDYFVDERKKLGSTKSTNNEGLKCAIDHILDAQRKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQQKVREEIDRVLGPGHQVTEPDIQKLPYLQAVVKETLRLRMAIPLLVPHMNLQDAKLGGYDIPAESKILVNAWWLANNPAHWKKPEEFRPERFFEEESHVEANGNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFELLPPPGQSKIDTSEKGGQFSLHILKHSTIVAKPISF 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2780 505 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
Ssu6g2780 505 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 504 - -
Ssu6g2780 505 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2780 505 PRINTS E-class P450 group I signature 399 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2780 505 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2780 505 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2780 505 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2780 505 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2780 505 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2780 505 PRINTS E-class P450 group I signature 358 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2780 505 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2780 505 Gene3D Cytochrome P450 23 496 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2780 505 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 504 - -
Ssu6g2780 505 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2780 505 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2780 505 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2780 505 SUPERFAMILY Cytochrome P450 34 485 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g2780 505 Pfam Cytochrome P450 34 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2780 Ssu-Chr6 64460277 64464628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2780 1 502 Monolignol Biosynthesis Gene Families AT2G30490 84.462 0.0 880
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2780 K00487 - gmx:100499623 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1318 9 47490342 47494363 Ssu6g2780 6 64460277 64464628 PCT