Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2779 ATGGATGCTAGACTATTGGTGGATGGTGCTGGCAAAGGAAATCTAATGCAATTGTGTAGAATTGTTGAAGCTAGTGAATCCAGCCGTTGGCCTCAAGCTGAGAGAGATGCCATAAATTCATGTGTTGGTCCAAACAGGAAAGAGGGTAGAAGATTTTCAACTGTGATGAAACCATCTAGTCATTCATTAGCATTTACTACATTACAAAATAACAGGCCAACATGGGAGACTAAAAGTATGCACAAATCACACTCACTGAATATTTCTCTGGGAACCTCATCAGGAAATTCTGTCCTGCCTTCTGCTTCAGAGACTGTAGAAGGGAGACTTGAGGGTAATGCATTGTCTTCTCCCTTTCATCAAGGGCAAAGATCTCTCTCCATATTGTCTAAACCATTGACGAATGGGATAACCGTGAATCTGGAAACAAATAAAGGCATGATTTCTCAGGAACGCCTTGCCCGGCCACCTGCTGATGGGAGAGGCAAGAATCTGTTACTTTCTCGATACTGGCCTAGGATTACTGATCGAGAGCTGGAGCAATTGTCGGGTTTGAAGTCTACAATAGTGCCTTTATTTGAGAAGGTACTGAGTGCCAGTGATGCTGGTCGAATTGGTAGACTTGTTCTCCCAAAATCCTGCGCTGAGGCTTACTTTCCTCCTATTTCAGAGTCAGAAGGTCTTCCTTTGCAGATCCAAGATGTGAAGGGGAATGAGTGGACATTTCAGTTCAGATTTTGGCCTAATAACAATAGTAGGATGTATGTATTGGAGGGAGTAACCCCTTGCATACAGGCCTTGCAATTAAATGCTGGTGATACTGTGACATTTAGTCGGATAGATCCTGGAGGCAAATTTGTTATGGGTTTCAGAAGGGCATCAGATTCTATAGATACACAGGCGAGATTATTATCCATTTTACTATATACAAGGAAAAGGAATGGCGAACCTTACTTAAATGGATATTCAGAACATTTGCGTTTGGGGTCTGCAACTGCTGATTGTCTTCAAACTGAAAATTATGAGATGTTAAACAATGATCTGTTGCAGCGGCCAATTTCAGTTTCAGAGAAGAGGACTCAAAATGTTAGGCCTAAGAGGTTGCTCGTACATAATGAAGATGCTATGGAGTTGAAACTTACATGGGAAGAAGCACAGGACTTGCTTTGTCAGCCGCCTAATGTCAAGCCAAGTATTGTAAGAATTGAGGACCAAGAATTTGAGGAATATGAGGAACCCCCGGTTTTTGGAAAGAGAACTACAATCAATGCCCATCCATCTGGTAAATGTGTGGTTTGGGGTTCTTATTATGGACAATGGCTTTTCAGGTCTTTGAGCTCTCCATCAGAGGAAAGAAATCAAAAGCAGTTTGCAAAGACACCATCAGAGGAACTGGGTCCAAAGGAATTAGAAAATATTCCGGAAACCAGCAAAGTCGCAGTTGTGGTCGCGACCATTGGAGTTGCAAGCATTGTGGATGTTGCAATGCGGATTGCGACTGTTCATAACAGCAGACAAGATAATGGGGAAGAAAATGTTACCCTGATGCAGAGGCGTTGTGGAATGGATTGTGGAGGGAGATGCTTATTATGGTTAGTCAGCAAGGTTGGTCAAATATCAGAGATCACTTTCAGTGATATTAACGAGCAGCGAAAGGCAAAGCCAATCTTACTAGGTCTTGAAGATTTGTACCAAGGAATCCCAGATGAATCCGTTAACCTCACCTTTCAAGACCTGGCTCAAGTGAACACATCGGAGAAGAGAAAACCCACAACACGAACAACAACAACTACACCTTCACGCTCTCTGGCCAAACTACCTAGTCTTGATTTCACGAAAGGCCTGCAAGCTTCTACTCAACACCATGACCACCACCTGCAAGGCTTTGGCCATGCAAGTGGTCATTCTGGTCATGGTGACTCACCGTGGGGTCATTCTGGTCATTTTAGCCACGCAACTGGTGGTGCACAAACACAAAGTCCTCGGTGCGTGGCTAGTGGAGATGATCGTTTGGGGTATGGTATGAGCTTTGATGATATGAGTGTTGCTTCGGGAAGAGGTGGTCGACGACGCCGACCTGGGATTCCTCACTCTAAGATTTGCGCAATTTGCAATACCTATACTTACATATTCCGGACTAGATGCCTGGTGTGCGGCAGAGTTTATTGCAGGCAATGTGTAGAAACAGGAATGGGGGAGATGATAGAAGGAAGAAAGTGTATTGAGTGCCTTGGATTGAGATTCAGCCAAAGGTATATAGAAAGAGCAGGGAAGGTAGGGTGCTGTAGTTGGAGGTATCCAAAGACATTGAAACAGGTTGAACTCAAGTGTGCCGAGAAAGGACCAAGGAGGAGCGGAAGGTATGGTCATAGTGGGATGGCAAACTCAAGATCACGAAGTCCTGTTATCCCAAGAAGGACTCATGCTATTGGTAGCAATGAACACTCCTTTGTCATGTCCTCATCCTTTTCTCCTTTCTCGCCTCATCTCAATCTCCCTTTATAA 2505 0.4407 MDARLLVDGAGKGNLMQLCRIVEASESSRWPQAERDAINSCVGPNRKEGRRFSTVMKPSSHSLAFTTLQNNRPTWETKSMHKSHSLNISLGTSSGNSVLPSASETVEGRLEGNALSSPFHQGQRSLSILSKPLTNGITVNLETNKGMISQERLARPPADGRGKNLLLSRYWPRITDRELEQLSGLKSTIVPLFEKVLSASDAGRIGRLVLPKSCAEAYFPPISESEGLPLQIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQALQLNAGDTVTFSRIDPGGKFVMGFRRASDSIDTQARLLSILLYTRKRNGEPYLNGYSEHLRLGSATADCLQTENYEMLNNDLLQRPISVSEKRTQNVRPKRLLVHNEDAMELKLTWEEAQDLLCQPPNVKPSIVRIEDQEFEEYEEPPVFGKRTTINAHPSGKCVVWGSYYGQWLFRSLSSPSEERNQKQFAKTPSEELGPKELENIPETSKVAVVVATIGVASIVDVAMRIATVHNSRQDNGEENVTLMQRRCGMDCGGRCLLWLVSKVGQISEITFSDINEQRKAKPILLGLEDLYQGIPDESVNLTFQDLAQVNTSEKRKPTTRTTTTTPSRSLAKLPSLDFTKGLQASTQHHDHHLQGFGHASGHSGHGDSPWGHSGHFSHATGGAQTQSPRCVASGDDRLGYGMSFDDMSVASGRGGRRRRPGIPHSKICAICNTYTYIFRTRCLVCGRVYCRQCVETGMGEMIEGRKCIECLGLRFSQRYIERAGKVGCCSWRYPKTLKQVELKCAEKGPRRSGRYGHSGMANSRSRSPVIPRRTHAIGSNEHSFVMSSSFSPFSPHLNLPL 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2779 834 Gene3D - 172 298 IPR015300 -
Ssu6g2779 834 MobiDBLite consensus disorder prediction 456 471 - -
Ssu6g2779 834 SMART B3_2 193 294 IPR003340 GO:0003677
Ssu6g2779 834 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 11 478 - -
Ssu6g2779 834 ProSiteProfiles B3 DNA-binding domain profile. 193 294 IPR003340 GO:0003677
Ssu6g2779 834 MobiDBLite consensus disorder prediction 583 605 - -
Ssu6g2779 834 CDD B3_DNA 191 292 IPR003340 GO:0003677
Ssu6g2779 834 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 11 478 - -
Ssu6g2779 834 SUPERFAMILY DNA-binding pseudobarrel domain 190 292 IPR015300 -
Ssu6g2779 834 MobiDBLite consensus disorder prediction 583 607 - -
Ssu6g2779 834 MobiDBLite consensus disorder prediction 620 662 - -
Ssu6g2779 834 Pfam B3 DNA binding domain 193 293 IPR003340 GO:0003677
Ssu6g2779 834 MobiDBLite consensus disorder prediction 452 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2779 Ssu-Chr6 64430882 64450017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2779 53 440 B3 DNA Binding Superfamily AT4G32010 50.253 5.73e-112 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu6g2779 B3 1.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2779 - - gmx:100799429 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1313 9 47427507 47434732 Ssu6g2779 6 64430882 64450017 PCT