Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2777 ATGCAAGATCCATCTTCAAACCCTAATTCCAATCCGAATCCCAATCCCAATCCTCACAATGCCAATGCCGCATCCCAATTACCGCGCCCGCCGCCGGGCATGGCAGCCACCACCGCCGGCGCCTCCTCGTCCTCGCTGTTCGCGCGCTCCAGCGGGTCTCACCACCGGCGGGCGCACTCGGAGGTGAGTTTCCGGCTGCCGGACGACATGATGGACCTGTCGCCGTCAGATCCATTCGCCGGCGGGTCGTCGACGGCGAGCATGGAGGAGATCGGATCCGAGGACGACCTGTTCTCGACGTACATTGACGTGGACGGGTCGGGCGCCGCCGGAAACGGAGCGGATCCGAACGGCGAACGCGAGAAGAGTCCGGCGAGGCTGCGGCACCGGCATAGTAGTTCGGTCGACGGTTTTGCGTCGTTCGGGGAAATTATGGAAGCGAAGAAGGCTATGCCTCCTGATAAGTTAGCTGAGCTATGGACAATTGATCCCAAGCGTGCCAAGAGAATACTTGCGAATCGGCAATCTGCTGCTCGTTCGAAAGAGAGAAAAGCGCACTATATACAAGAACTTGAGCGCAAGGTTCAGACTCTTCAGACGGAAGCCACAACTCTTTCTGCCCAATTGACATTATACCAGAGGGACACAACGGGCCTGAGTACTGAAAATACAGAGCTTAAGCTCCGTTTGCAAGCCATGGAGCAACAAGCACAGCTTCGCGATGCTCTTAATGAAGCATTGAAGAAGGAAGTTGAGAGACTTAAAGTTGCTACTGGTGAGATAATGAGCCACACTGAATCCTTTAATCTGGGAATGCACCAGATGCCATTTACAGGAACAAATTTCGTTCCAATCCCGCCACAATCAGGTCCTTCTGGTCACCAGAACATCCAGTTGCCACCATTTGGTCACTCCCCATCCACAATGCCAATTCATCAACTGCATCAAACAAGTTCTCATCCACTTTCAGAAATATTGCAAAATGACCAGCTTGGTCGTTTCCAGGGGCTTGACATTAGTAGCAAAGGATCAACTCTCGTGAAGTCTGAAGGCCCCTCACTTTCTGCAAGTGAGAGTAGCACTACGTTTTGA 1092 0.5302 MQDPSSNPNSNPNPNPNPHNANAASQLPRPPPGMAATTAGASSSSLFARSSGSHHRRAHSEVSFRLPDDMMDLSPSDPFAGGSSTASMEEIGSEDDLFSTYIDVDGSGAAGNGADPNGEREKSPARLRHRHSSSVDGFASFGEIMEAKKAMPPDKLAELWTIDPKRAKRILANRQSAARSKERKAHYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEIMSHTESFNLGMHQMPFTGTNFVPIPPQSGPSGHQNIQLPPFGHSPSTMPIHQLHQTSSHPLSEILQNDQLGRFQGLDISSKGSTLVKSEGPSLSASESSTTF 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2777 363 Coils Coil 181 208 - -
Ssu6g2777 363 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 9 360 - -
Ssu6g2777 363 MobiDBLite consensus disorder prediction 1 89 - -
Ssu6g2777 363 MobiDBLite consensus disorder prediction 37 51 - -
Ssu6g2777 363 SUPERFAMILY Leucine zipper domain 165 216 IPR046347 GO:0003700|GO:0006355
Ssu6g2777 363 Pfam bZIP transcription factor 165 220 IPR004827 GO:0003700|GO:0006355
Ssu6g2777 363 Coils Coil 229 260 - -
Ssu6g2777 363 MobiDBLite consensus disorder prediction 101 133 - -
Ssu6g2777 363 MobiDBLite consensus disorder prediction 119 133 - -
Ssu6g2777 363 Gene3D - 164 216 - -
Ssu6g2777 363 MobiDBLite consensus disorder prediction 343 363 - -
Ssu6g2777 363 CDD bZIP_plant_RF2 166 215 IPR044759 GO:0003700|GO:0006355
Ssu6g2777 363 PANTHER ATBZIP TRANSCRIPTION FACTOR 9 360 - -
Ssu6g2777 363 SMART brlzneu 161 225 IPR004827 GO:0003700|GO:0006355
Ssu6g2777 363 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 163 226 IPR004827 GO:0003700|GO:0006355
Ssu6g2777 363 MobiDBLite consensus disorder prediction 289 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2777 Ssu-Chr6 64395944 64398439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2777 1 363 bZIP Transcription Factor Family AT2G40620 50.244 1.72e-100 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu6g2777 bZIP_1 1.5e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2777 - - vra:106763153 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1305 9 47240910 47244312 Ssu6g2777 6 64395944 64398439 PCT