Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2772 ATGTTTAAGAGGAGAGTCAAGCTTGCATTTCTGACCAATGAGTCAGTGAGGCAAGCAACATtcaggaagaagaagagaagcatCATGAAGGAGCTCAGAGAGTTCAAAGCCGCTCATGGGATGGAGGCATGCGCCATAGTGCGCAGGGCTGATGCTCGTGAGCCAGAGATTTGGGCATCTAGTGATGGTCTCCGAAAGGCGCTAATGAAGTCGGCACAAGAGCAGCAGAGAAGGAGGTTGGAGGGCCAAGAAGAGAGCCACGTGGACAAAATGATTAAGGAGGCCAAGAAGAAGCTCATGAAGCTGAGGGAGGAGAATAGGAAGAAGGAGCTGCTCATTCGCATGCTTCGTGAATGTGATGAGACGGGAGATTGTCATCTCCCGGAGGATATAACCAAGAATGAGCTAAGAGGCCTATTGGAATTGATTGATATGCATACCAAAGAAATCAAGCGACAGTTGGAGGAATTAAATGATGAACCCACCGAGGTTCAAGCCACCGTGGTTGCACCACCTGCAGTTGTGGTTGTGAAAGGTGGAGAGGGTTTGGGGACGATTCTGGAAGCCATTGATGAACTAAAGAtccaataa 591 0.467 MFKRRVKLAFLTNESVRQATFRKKKRSIMKELREFKAAHGMEACAIVRRADAREPEIWASSDGLRKALMKSAQEQQRRRLEGQEESHVDKMIKEAKKKLMKLREENRKKELLIRMLRECDETGDCHLPEDITKNELRGLLELIDMHTKEIKRQLEELNDEPTEVQATVVAPPAVVVVKGGEGLGTILEAIDELKIQ 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2772 196 SUPERFAMILY SRF-like 1 68 IPR036879 GO:0003677|GO:0046983
Ssu6g2772 196 Coils Coil 140 160 - -
Ssu6g2772 196 Gene3D - 13 118 IPR036879 GO:0003677|GO:0046983
Ssu6g2772 196 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 4 159 - -
Ssu6g2772 196 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Ssu6g2772 196 Coils Coil 85 112 - -
Ssu6g2772 196 PANTHER MADS BOX PROTEIN 4 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2772 Ssu-Chr6 64368760 64369350 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2772 1 176 Type I MADS-box Gene Family AT3G05860 27.273 9.79e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ssu6g2772 SRF-TF 3.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2772 - - pvu:PHAVU_008G247900g 99.7525