Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2770 ATGGCACCCCATGCATCTTCTTTTGCTCTAGTTATTATCATGTTTCTCTTCATTGAAATGCACTTGCAGGGTGCCACTGCCGACTATGGCGGTTGGCAGGGTGGCCACGCTACTTTCTATGGGGGTGGTGATGCTTCTGGCACAATGGGAGGTGCATGTGGTTATGGGAATTTGTACAGTCAGGGATATGGAACTAACACTGCAGCTCTAAGCACTGCTTTGTTCAACAATGGCTTGAGTTGTGGGGCTTGTTATGAAATGAGGTGTGCTCATGACCCAAGATGGTGCAAGCCTGGCACCATTGTTGTTACTGCTACAAACTTCTGTCCTCCAAACTTTGCTTTGTCCAATAATAATGGTGGTTGGTGCAACCCTCCTCTACAACACTTTGATATGGCAGAACCAGCCTTCCTGCAAATTGCCCAATATAGAGCTGGAATTGTGCCTGTGGTTTTTAGAAGAGTGCCTTGTGTGAAAAAGGGAGGAATAAGGTTCACAATTAATGGCCACTCTTACTTCAACCTGGTTTTGATCACCAACGTCGCGGGTGCAGGGGATGTCCATGCAGTGTCCATCAAAGGGTCCAAAACTGGTTGGCAACCCATGTCAAGGAACTGGGGGCAAAATTGGCAGAGCAATTCCTACCTCAATGGACAAAGCCTCTCTTTTCAAGTCACCGCCAGTGACGGTAGAACTGTGACAAGCTACAACGTGGCACCAGCTAACTGGCAGTTTGGAGGTGCATGTGGTTATGAGAATTTGTTCAGTCAGGGATATGGCACCAACACTGCAGCTCTAAGCACTGCTTTGTTCAACAATGGCTTGAGTTGTGGGGCTTGTTATGAAATGAGGTGTGCTCATGACCCAAGATGGTGCAAGCCTGGCACCATTGTTGTTACTGCTACAGACTTCTGTCCTCCAAAGTTTGCTTTGTCCAATAATAATGGTGGTTGGTGCAACCCTCCTCTACAACACTTTGATATGGCAGAACCAGCCTTCCTGCAAATTGCCCAATATAGAGCTGGAATTGTGCCTGTGGCTTTTAGAAGGTACGTGAAGCCATAA 1065 0.4723 MAPHASSFALVIIMFLFIEMHLQGATADYGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEMRCAHDPRWCKPGTIVVTATNFCPPNFALSNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVVFRRVPCVKKGGIRFTINGHSYFNLVLITNVAGAGDVHAVSIKGSKTGWQPMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSYNVAPANWQFGGACGYENLFSQGYGTNTAALSTALFNNGLSCGACYEMRCAHDPRWCKPGTIVVTATDFCPPKFALSNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVAFRRYVKP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2770 354 Gene3D - 18 157 IPR036908 -
Ssu6g2770 354 Gene3D - 216 352 IPR036908 -
Ssu6g2770 354 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 246 350 IPR007112 -
Ssu6g2770 354 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Ssu6g2770 354 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Ssu6g2770 354 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Ssu6g2770 354 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Ssu6g2770 354 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Ssu6g2770 354 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Ssu6g2770 354 SMART dpbb_1 263 348 IPR007112 -
Ssu6g2770 354 SMART dpbb_1 67 152 IPR007112 -
Ssu6g2770 354 SUPERFAMILY Barwin-like endoglucanases 31 180 IPR036908 -
Ssu6g2770 354 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 246 IPR007117 -
Ssu6g2770 354 PANTHER EXPANSIN 246 350 - -
Ssu6g2770 354 SUPERFAMILY Barwin-like endoglucanases 233 350 IPR036908 -
Ssu6g2770 354 Pfam Lytic transglycolase 263 347 IPR009009 -
Ssu6g2770 354 Pfam Lytic transglycolase 67 151 IPR009009 -
Ssu6g2770 354 PANTHER EXPANSIN-A15 246 350 IPR002963 GO:0009664
Ssu6g2770 354 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Ssu6g2770 354 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Ssu6g2770 354 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Ssu6g2770 354 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Ssu6g2770 354 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Ssu6g2770 354 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Ssu6g2770 354 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Ssu6g2770 354 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Ssu6g2770 354 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Ssu6g2770 354 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Ssu6g2770 354 SUPERFAMILY PHL pollen allergen 161 247 IPR036749 -
Ssu6g2770 354 PANTHER EXPANSIN-A15 7 246 IPR002963 GO:0009664
Ssu6g2770 354 PANTHER EXPANSIN 7 246 - -
Ssu6g2770 354 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 162 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2770 Ssu-Chr6 64307957 64330634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2770 230 350 Expansin Gene Family AT2G40610 75.207 4.81e-60 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2770 - - gmx:100816848 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1296 9 46855617 46857841 Ssu6g2770 6 64307957 64330634 PCT