Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2767 ATGGGTAACAACAGGTTCAAGTTGTCAGATATGATACCAAATGCTTGGTTTTACAAGCTAAAAGATATGAGCAGATCAAGGAAGAGAAATGGTTCTCATGTTATGAAGAGTAAAGTGTCTTCCCCAACAACATCCCAAAGGTCGCTGCCAAGATATTCACACTATTTTTCGACTGAGCCAATAAGAGCTGGTAAGCTATACAACACTCCTATTCACACCAAAGACTTGGACATGCCATTCACTGATTCACCTAGAAGGTCATCCAAGAGAAGGGCTAGGAGAAAAACCATTTACAAGCCTTCTCCCACTGTTGTCTCCTCCTCTTTCATGCCCACTTCCAGCTATGACTCCACAAATCATTGGATCAAACCATATCAAGTTCAGTCACCAGATTATGATGTGTCTTCAGTTGAAAGCTCTTCTGAATCTGATCTCCATGAATATGTTTATTCTGAGTCTGAATGTGACAGCTTTTCTGTTCCCGACTTGCTTAATGGCATGGCCTCTAATTGCAGTTGCAGAGTTAGCTCTTCCACTAATGACATCATCATTGACATGAACAATGAGGCCTTCCTTGGGAATCCTGAAAAACAAGATGGGTTTGATGCAATTTCACAGCTAGGTCTTGCTCCAATATTGACAAAGCCAGTGAAGTTTGATGATAAGGTCATCGAAGCCACTGAGCAGAGAAGTTCAACTGAATTTGATGAGCTGCAGGATGATCAGTCTTTCTCAATAGAAATTGACAAAGAGGAAAGCAAGAGAACTCAAAGGAGGAGAAAAAGCAGTCATAGGAAGCCCTTTGCTAATTCTGCAGGCATAAGGCTTAGAGTCAATTCTCCAAAACTTGCAAGCAGGAAAATTCAAGCCTGTTCAAGAAGGAGTGTGTCATCCACTGCAAGCAAAGCGTCAAGGAGTACAGGCTTCCCAGATGGATTTGCTGTTGTTAAGTCCTCATTTGATCCACAGAGCGACTTCAGGGAGTCAATGGTGGAGATGATTGTGGAGAACAATATCCGGGCATCGCAAGATTTGGAGGACTTACTCGCCTGCTACCTTTCCCTCAATTCAAGTGAATACCATGATCTCATTGTTAAAGCATTTGAGCAAATTTGGTTTGACATGGCTCAACTCAGAATGTAA 1143 0.4208 MGNNRFKLSDMIPNAWFYKLKDMSRSRKRNGSHVMKSKVSSPTTSQRSLPRYSHYFSTEPIRAGKLYNTPIHTKDLDMPFTDSPRRSSKRRARRKTIYKPSPTVVSSSFMPTSSYDSTNHWIKPYQVQSPDYDVSSVESSSESDLHEYVYSESECDSFSVPDLLNGMASNCSCRVSSSTNDIIIDMNNEAFLGNPEKQDGFDAISQLGLAPILTKPVKFDDKVIEATEQRSSTEFDELQDDQSFSIEIDKEESKRTQRRRKSSHRKPFANSAGIRLRVNSPKLASRKIQACSRRSVSSTASKASRSTGFPDGFAVVKSSFDPQSDFRESMVEMIVENNIRASQDLEDLLACYLSLNSSEYHDLIVKAFEQIWFDMAQLRM 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2767 380 MobiDBLite consensus disorder prediction 35 53 - -
Ssu6g2767 380 Pfam DNA-binding domain 1 43 IPR025830 GO:0003677
Ssu6g2767 380 MobiDBLite consensus disorder prediction 229 271 - -
Ssu6g2767 380 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 313 375 IPR006458 -
Ssu6g2767 380 MobiDBLite consensus disorder prediction 74 96 - -
Ssu6g2767 380 MobiDBLite consensus disorder prediction 229 256 - -
Ssu6g2767 380 MobiDBLite consensus disorder prediction 27 53 - -
Ssu6g2767 380 Pfam Transcriptional repressor, ovate 319 375 IPR006458 -
Ssu6g2767 380 ProSiteProfiles OVATE domain profile. 315 374 IPR006458 -
Ssu6g2767 380 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 3 379 IPR038933 GO:0045892
Ssu6g2767 380 PANTHER TRANSCRIPTION REPRESSOR OFP1-LIKE 3 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2767 Ssu-Chr6 64239785 64240927 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Ssu6g2767 Ovate 8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2767 - - gmx:100780926 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2767 6 64239785 64240927 Ssu6g2767 6 64239785 64240927 ECH
Ssu9g1294 9 46826165 46827301 Ssu6g2767 6 64239785 64240927 PCT