Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2761 ATGTCTCCTATGGAGAACACATCAAATATCTTGATGCAAAAATATGAATTGGGAAGGTTACTAGGCCAAGGCACATTTGGTAAGGTTTACTATGCACGTAGTACAATACCTAACCAAAGTGTGGCTGTTAAAGTGATTGACAAGGATAAGGTTATCAAAACTGGGCAAGCTGATCAAATTAAACGGGAAATATCTGTTATGAGACTGGTCAAACATCCAAATGTTATTGAGCTTTTTGAGGTCATGGCCACCAAGAGTaagatttattttgttatggaATATGCTAAAGGTGGAGAGCTGTTTGAGAAGGTGGCCAAGGGAAAGCTCAAAGAAGATGTTGCACACAAATATTTCAGGCAGCTAGTGAATGCAGTGGATTTTTGTCACAGCAGAGGTGTATACCATAGAGATATAAAGCCAGAGAACATTCTGTTGGATGAAAATGAGAGTCTGAAGGTCTCGGATTTCGGGTTAAGTGCCCTGGCTGATTCCAAACGGCAAGATGGTTTGCTGCACACAACTTGTGGAACACCTGCCTATGTTGCTCCTGAGATCATCAAAAGGAAAGGTTATGATGGTGCCAAAGCTGATATTTGGTCTTGTGGGGTAGTTTTGTTTGTCTTACTGGCGGGTTACATTCCTTTTCATGACCCAAATTTGATGGAGATGTATAGGAAGATAAGCAAGGTAGAGTTTACATGTCCTAGTTGGTTCCCGCGAGGGGTTCGGAGGTTATTGAGGAAGATGTTGGATCCGAATCCTGACACTAGGATTTCCATAGACAAGATTAAGCAATGTTCTTGGTTTAGAAAGGGGCCAAATGGTAGacaaaaaacacaagaaggggaaaACAAGAGTGTCTCTCCTTCAGTTACAAATCATTCTGAACAATGTGGTGATGAAAGTGATGGTTTAGCAGCAGAAGCAAGGGAAGAGTCAGTTGTGCCAGTAAGTATAAATGCCTTTGATATCATCTCCCTTTCAGCTGGTTTTAATCTTTGTGGATTCTTTGAAGACAGTGTTCAGAAAAGGGAAGCAAGATTTACTTCAAGACAACCAGCATTGGTCATCATCTCCAGGCTGGAAGAAACTGCGAAGCGGCTGAAgctgaaaataaagaaaagggctGCAGGTTTGTTGAAATTGGAGGGCCTTCATGAAGGAAGGAAGGGGATTTTATCCATTGATGCGGAGATCTTTGAGGTTACTCCACTTTTGCACTTGGTGGAGGTGAAGAAATCAAAGGGAGATACATTGGAATAtgagaaaatattgaaagaGGACATAAGGCCTGCTCTTAAAGATGTTGTTTGGGTTTGGCAAGGTGACCAACAAGAGCAATCACAACAGTTGGAGCAACAGCAGCAGCAATCAGTGATAAGTAcaacatatttttag 1398 0.3941 MSPMENTSNILMQKYELGRLLGQGTFGKVYYARSTIPNQSVAVKVIDKDKVIKTGQADQIKREISVMRLVKHPNVIELFEVMATKSKIYFVMEYAKGGELFEKVAKGKLKEDVAHKYFRQLVNAVDFCHSRGVYHRDIKPENILLDENESLKVSDFGLSALADSKRQDGLLHTTCGTPAYVAPEIIKRKGYDGAKADIWSCGVVLFVLLAGYIPFHDPNLMEMYRKISKVEFTCPSWFPRGVRRLLRKMLDPNPDTRISIDKIKQCSWFRKGPNGRQKTQEGENKSVSPSVTNHSEQCGDESDGLAAEAREESVVPVSINAFDIISLSAGFNLCGFFEDSVQKREARFTSRQPALVIISRLEETAKRLKLKIKKRAAGLLKLEGLHEGRKGILSIDAEIFEVTPLLHLVEVKKSKGDTLEYEKILKEDIRPALKDVVWVWQGDQQEQSQQLEQQQQQSVISTTYF 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2761 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Ssu6g2761 465 PANTHER - 5 454 - -
Ssu6g2761 465 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2761 465 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Ssu6g2761 465 CDD CIPK_C 320 434 - -
Ssu6g2761 465 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2761 465 Gene3D Kinase associated domain 1, KA1 319 439 - -
Ssu6g2761 465 SUPERFAMILY Protein kinase-like (PK-like) 11 283 IPR011009 -
Ssu6g2761 465 Pfam Protein kinase domain 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2761 465 ProSiteProfiles NAF domain profile. 314 338 IPR018451 GO:0007165
Ssu6g2761 465 MobiDBLite consensus disorder prediction 279 299 - -
Ssu6g2761 465 Pfam NAF domain 316 374 IPR004041 GO:0007165
Ssu6g2761 465 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 5 454 - -
Ssu6g2761 465 Gene3D Transferase(Phosphotransferase) domain 1 5 318 - -
Ssu6g2761 465 CDD STKc_SnRK3 14 268 - -
Ssu6g2761 465 MobiDBLite consensus disorder prediction 269 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2761 Ssu-Chr6 64122045 64123442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2761 4 446 CBL-interacting serine-threonine protein kinases AT5G58380 68.062 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu6g2761 Pkinase 4.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2761 - K07198 gmx:100779316 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2761 6 64122045 64123442 Ssu6g2761 6 64122045 64123442 ECH
Ssu6g2761 6 64122045 64123442 Ssu9g1287 9 46734391 46735779 ECH
Ssu3g0989 3 23215301 23216677 Ssu6g2761 6 64122045 64123442 ECH
Ssu9g1287 9 46734391 46735779 Ssu6g2761 6 64122045 64123442 PCT