Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2759 ATGGGAAGGAAGCATTTCTATGGTCCAACTTCTGGGACAACCTTAAACACAGTAACCCCTTGTGCTGCATGCAAGCTTTTGAGAAGAAGGTGTGCTGAAGAATGTCCTTTCTCTCCTTATTTTTCACCACATGAGCCTCAAAAGTTTGCAGCCGTTCACAAAGTGTTTGGTGCAAGCAATGTCTCTAAGATGCTAATGgAGGTACCAGAGGGCCAAAGAGCTGATGCAGCAAGTAGCCTGGTTTATGAAGCTAACTTGAGGCTAAGAGATCCTGTGTATGGATGCATGGGTGCAATATCAGCTTTGCAGCAGCAAGTTCAATCATTACAAGCAGAACTAAATGCAATAAGGGCAGAGATACTAAAATACAAATACAGTGAGGCTGCAAGTCTCATTTCTTCTCATCATGCTGCTTTAGTTTCTTCTGCTGATGCAATATCAGCAGCAATTCCTGCAGGCTCACAAGGTCTTTCTCAACCtcatcctcctcctccaccaccaAAACCATTACCTTCTCCTCCACCAAAACCTCTACCTTCTCCTTCTGTTATCCTTTCATCCTTGTCTTCATCTTCAACTACTTCTGTGTACACTCCTCCTAAAAGCTCTATGAATCTTGGATCCATTTCCAGCACTGAAAATGTCCCATACTTTGTTTAG 660 0.4121 MGRKHFYGPTSGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPEGQRADAASSLVYEANLRLRDPVYGCMGAISALQQQVQSLQAELNAIRAEILKYKYSEAASLISSHHAALVSSADAISAAIPAGSQGLSQPHPPPPPPKPLPSPPPKPLPSPSVILSSLSSSSTTSVYTPPKSSMNLGSISSTENVPYFV 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2759 219 PANTHER LOB DOMAIN PROTEIN 11 218 - -
Ssu6g2759 219 MobiDBLite consensus disorder prediction 157 181 - -
Ssu6g2759 219 ProSiteProfiles LOB domain profile. 19 120 IPR004883 -
Ssu6g2759 219 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 218 - -
Ssu6g2759 219 MobiDBLite consensus disorder prediction 182 219 - -
Ssu6g2759 219 MobiDBLite consensus disorder prediction 152 219 - -
Ssu6g2759 219 Pfam Lateral organ boundaries (LOB) domain 20 116 IPR004883 -
Ssu6g2759 219 Coils Coil 99 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2759 Ssu-Chr6 64071782 64072561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2759 1 133 AS2 family AT2G30340 78.358 8.32e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu6g2759 LOB 8.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2759 - - ccaj:109795340 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2759 6 64071782 64072561 Ssu6g2759 6 64071782 64072561 ECH