Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu6g2757 | ATGGAGATATCTTTGTTAAAGGTGCTATCTGATGCGATATCCTCGTtttcacatttatcattttctgaAAAGATGAAGTTAGAACCTGTATCTAAGTATTACCAAAAGACAGAGAAGATGCTTAAGTTGTTGAAGCTGAGTATTGATACTACTGTTTTTTCTGATTTAGCTTCTAACGAAGTGCTTAGTAAGCAATTCGAGGAACTTACTCTGGCTGTTGATGAGTTAAGGGAGCTTATTCTGAACTGGCATCCATTATCTAGCAAATTTTACTTTGTTATTCAAGTTGATCCCTTGATATCAACAATTCAGGCCTTGGGACTCAGCATTTTACAAGAGCTGAAGGCTTCGCCTCAATGTCTCCCTGATAATTTGGGAAATGAAACATCATTTGCCATTAAAGAAGCTATTATGGAACAACTGGAAGGTGTAGAACCAAGTTCAGAGGTCTTGGAAAACATCGCAGAGAACCTGGGTCTAAGGTCTAATCAAGAGGTCCTGTTTGAGGCTGTAGCCCTTGAAAAGTTGAAGGAGAATGCtgaacaaattgaaaatactgCAGAAGCTGAATATATTGATCAAATGATTTCAGTTGTAAATCGGATGCATGAGCATCTTGTTATGCTTAAGCAAGCTCAGAGCTCTATCCCAGTGCCAGTACCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAGTTGATGACAGATCCAGTCATTGTGGCATCAGGGCAAACATATGAGCGGGCTTTCATCAAGAATTGGATTGATCTCGGGCTTATTGTCTGTCCAAAGACACGTCAGACTCTGGTTCACACCAATCTAATACCTAACTACACTGTAAAGGCATTAATTGCTAACTGGTGTGAATCAAACAATGTGAAGCTTGTTGATCCCATTAAgtccaaaaatttaaatcaactaTCTCCCTTTCATGGCTCTATGGAGTCTGCCTTGACCAAGGATTCGCCTGTTATAACTTGTGGTGAAATCCAGCAAGAAGGAACATCAACATTGCATCCCTGTTCAACTCTAGGTGGTTCCTTAAATGGCATGGTTAATGGGCAGCATGTGGATCTTGAAAGAACATCACTCGCAGGTTCAGATGATGGGTCTACCAACTCAGATGAAGGGAGTGTGGATTCAGTTGGCCAATCATTAATGTCACCATCTAGAAGGGAATCCTTCAATACCTTAAGCTCGGAACAATCTCAAACTGATGTTAATCATGTTAGAACTACTTCTGATAACAACAATGCTCCTCAGCTGTCAACCAGTCCAGTCCACAGTCAAGATGCTTCTGGGGAATTAAATTCAGGGCCAGATGCTGTTGCCATGCCAACTTGGCATAGAGAACCTGAGTTTTCACCCCAATTGGCCATGCCAAGGTCTCAAAGCCAAACTGTATGGCAACAGTCATCTGAGTGGTTTGTTCCTAGGATAGTGTCTACTCCTATTGAAATAAAAGCTGATGTCTCTGATACTGAAACCCATGTTTGGAAATTAGTGGAGCTGTTAAAGAGCGATGCTCTTGATATTAAGAGAGAGGCAACAGCAGAACTCCGCCTTCTTGCTAAGCACAATATGGATAATCGGAATGTGATTTCAAATTGTGGAGCCATTAGCTTATTAGTTGATTTACTTCAATCAACTGATACTACAATCCAGGAAAATTCTGTTACAGCACTACTTAACTTGTCAATCAATGATAACAACAAAGCTGCTATTGCAAATGCTGGTGCAATTGAACCTTTGATTCATGTCCTTAAGACAGGGAGTCCAGAAGCTATGGAGAATTCAGCTGCCACTCTTTTCAGCCTTTCAGTTACTGAGGAAAACAAGATCAGGATAGGGAGGTCTGGGGCAATTATACCACTGGTTGATTTATTAGGGAACGGAACCCCTAGGGGGAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGGATCAGATTGTGCAAGCCGGTGCTGTGAAACACCTTGTAGAGTTAATGGACCCTGCAGCTGGAATGGTTGATAAGGCGGTGGCTGTTTTAGCAAATCTTGCTACAATACCAGAAGGGAAAGTAGCAATTGGTCAGCAAGGGGGGATTCCTGTTCTGGTTGAGGTAATTGAGTTGGGTTCTGCAAGAGGGAAGGAGAACGCAACAGCGGCTCTTCTACATCTATGCTCAGACAACCACAAATATTTAAACATGGTGCTCCAAGAAGGAGCTGTGCCCCCTTTAGTAGCATTGTCACAATCAGGCACCCCAAGGGCCAAAGAGAAGgCCTTGGCTCTCCTTAATCtatttagaagccaaagacatGGTAGTGCTGGGAGGGCTTGA | 2343 | 0.4102 | MEISLLKVLSDAISSFSHLSFSEKMKLEPVSKYYQKTEKMLKLLKLSIDTTVFSDLASNEVLSKQFEELTLAVDELRELILNWHPLSSKFYFVIQVDPLISTIQALGLSILQELKASPQCLPDNLGNETSFAIKEAIMEQLEGVEPSSEVLENIAENLGLRSNQEVLFEAVALEKLKENAEQIENTAEAEYIDQMISVVNRMHEHLVMLKQAQSSIPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLIVCPKTRQTLVHTNLIPNYTVKALIANWCESNNVKLVDPIKSKNLNQLSPFHGSMESALTKDSPVITCGEIQQEGTSTLHPCSTLGGSLNGMVNGQHVDLERTSLAGSDDGSTNSDEGSVDSVGQSLMSPSRRESFNTLSSEQSQTDVNHVRTTSDNNNAPQLSTSPVHSQDASGELNSGPDAVAMPTWHREPEFSPQLAMPRSQSQTVWQQSSEWFVPRIVSTPIEIKADVSDTETHVWKLVELLKSDALDIKREATAELRLLAKHNMDNRNVISNCGAISLLVDLLQSTDTTIQENSVTALLNLSINDNNKAAIANAGAIEPLIHVLKTGSPEAMENSAATLFSLSVTEENKIRIGRSGAIIPLVDLLGNGTPRGKKDAATALFNLSIFHENKDQIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGKVAIGQQGGIPVLVEVIELGSARGKENATAALLHLCSDNHKYLNMVLQEGAVPPLVALSQSGTPRAKEKALALLNLFRSQRHGSAGRA | 780 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu6g2757 | 780 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 578 | 620 | IPR000225 | GO:0005515 | |
Ssu6g2757 | 780 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 619 | 661 | IPR000225 | GO:0005515 | |
Ssu6g2757 | 780 | SMART | arm_5 | 689 | 729 | IPR000225 | GO:0005515 | |
Ssu6g2757 | 780 | SMART | arm_5 | 526 | 566 | IPR000225 | GO:0005515 | |
Ssu6g2757 | 780 | SMART | arm_5 | 731 | 770 | IPR000225 | GO:0005515 | |
Ssu6g2757 | 780 | SMART | arm_5 | 567 | 607 | IPR000225 | GO:0005515 | |
Ssu6g2757 | 780 | SMART | arm_5 | 649 | 688 | IPR000225 | GO:0005515 | |
Ssu6g2757 | 780 | SMART | arm_5 | 608 | 648 | IPR000225 | GO:0005515 | |
Ssu6g2757 | 780 | MobiDBLite | consensus disorder prediction | 362 | 445 | - | - | |
Ssu6g2757 | 780 | PANTHER | RING-TYPE E3 UBIQUITIN TRANSFERASE | 467 | 776 | - | - | |
Ssu6g2757 | 780 | PANTHER | RING-TYPE E3 UBIQUITIN TRANSFERASE | 9 | 355 | - | - | |
Ssu6g2757 | 780 | SMART | Ubox_2 | 223 | 286 | IPR003613 | GO:0004842|GO:0016567 | |
Ssu6g2757 | 780 | SUPERFAMILY | ARM repeat | 497 | 769 | IPR016024 | - | |
Ssu6g2757 | 780 | Pfam | Armadillo/beta-catenin-like repeat | 567 | 606 | IPR000225 | GO:0005515 | |
Ssu6g2757 | 780 | Pfam | Armadillo/beta-catenin-like repeat | 528 | 565 | IPR000225 | GO:0005515 | |
Ssu6g2757 | 780 | Pfam | Armadillo/beta-catenin-like repeat | 609 | 647 | IPR000225 | GO:0005515 | |
Ssu6g2757 | 780 | Pfam | Armadillo/beta-catenin-like repeat | 651 | 687 | IPR000225 | GO:0005515 | |
Ssu6g2757 | 780 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 219 | 294 | IPR013083 | - | |
Ssu6g2757 | 780 | Gene3D | - | 480 | 777 | IPR011989 | - | |
Ssu6g2757 | 780 | PANTHER | U BOX DOMAIN-CONTAINING | 467 | 776 | - | - | |
Ssu6g2757 | 780 | PANTHER | U BOX DOMAIN-CONTAINING | 9 | 355 | - | - | |
Ssu6g2757 | 780 | Coils | Coil | 59 | 79 | - | - | |
Ssu6g2757 | 780 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 660 | 701 | IPR000225 | GO:0005515 | |
Ssu6g2757 | 780 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 537 | 579 | IPR000225 | GO:0005515 | |
Ssu6g2757 | 780 | CDD | RING-Ubox_PUB | 224 | 266 | IPR045210 | - | |
Ssu6g2757 | 780 | MobiDBLite | consensus disorder prediction | 364 | 435 | - | - | |
Ssu6g2757 | 780 | Pfam | U-box domain | 220 | 290 | IPR003613 | GO:0004842|GO:0016567 | |
Ssu6g2757 | 780 | SUPERFAMILY | RING/U-box | 209 | 297 | - | - | |
Ssu6g2757 | 780 | ProSiteProfiles | U-box domain profile. | 219 | 293 | IPR003613 | GO:0004842|GO:0016567 | |
Ssu6g2757 | 780 | Coils | Coil | 170 | 193 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu6g2757 | Ssu-Chr6 | 64041136 | 64043702 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu6g2757 | 180 | 780 | U-box Gene Family | AT2G23140 | 60.187 | 0.0 | 710 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu6g2757 | - | - | gmx:100777715 | 1259.59 |