Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2757 ATGGAGATATCTTTGTTAAAGGTGCTATCTGATGCGATATCCTCGTtttcacatttatcattttctgaAAAGATGAAGTTAGAACCTGTATCTAAGTATTACCAAAAGACAGAGAAGATGCTTAAGTTGTTGAAGCTGAGTATTGATACTACTGTTTTTTCTGATTTAGCTTCTAACGAAGTGCTTAGTAAGCAATTCGAGGAACTTACTCTGGCTGTTGATGAGTTAAGGGAGCTTATTCTGAACTGGCATCCATTATCTAGCAAATTTTACTTTGTTATTCAAGTTGATCCCTTGATATCAACAATTCAGGCCTTGGGACTCAGCATTTTACAAGAGCTGAAGGCTTCGCCTCAATGTCTCCCTGATAATTTGGGAAATGAAACATCATTTGCCATTAAAGAAGCTATTATGGAACAACTGGAAGGTGTAGAACCAAGTTCAGAGGTCTTGGAAAACATCGCAGAGAACCTGGGTCTAAGGTCTAATCAAGAGGTCCTGTTTGAGGCTGTAGCCCTTGAAAAGTTGAAGGAGAATGCtgaacaaattgaaaatactgCAGAAGCTGAATATATTGATCAAATGATTTCAGTTGTAAATCGGATGCATGAGCATCTTGTTATGCTTAAGCAAGCTCAGAGCTCTATCCCAGTGCCAGTACCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAGTTGATGACAGATCCAGTCATTGTGGCATCAGGGCAAACATATGAGCGGGCTTTCATCAAGAATTGGATTGATCTCGGGCTTATTGTCTGTCCAAAGACACGTCAGACTCTGGTTCACACCAATCTAATACCTAACTACACTGTAAAGGCATTAATTGCTAACTGGTGTGAATCAAACAATGTGAAGCTTGTTGATCCCATTAAgtccaaaaatttaaatcaactaTCTCCCTTTCATGGCTCTATGGAGTCTGCCTTGACCAAGGATTCGCCTGTTATAACTTGTGGTGAAATCCAGCAAGAAGGAACATCAACATTGCATCCCTGTTCAACTCTAGGTGGTTCCTTAAATGGCATGGTTAATGGGCAGCATGTGGATCTTGAAAGAACATCACTCGCAGGTTCAGATGATGGGTCTACCAACTCAGATGAAGGGAGTGTGGATTCAGTTGGCCAATCATTAATGTCACCATCTAGAAGGGAATCCTTCAATACCTTAAGCTCGGAACAATCTCAAACTGATGTTAATCATGTTAGAACTACTTCTGATAACAACAATGCTCCTCAGCTGTCAACCAGTCCAGTCCACAGTCAAGATGCTTCTGGGGAATTAAATTCAGGGCCAGATGCTGTTGCCATGCCAACTTGGCATAGAGAACCTGAGTTTTCACCCCAATTGGCCATGCCAAGGTCTCAAAGCCAAACTGTATGGCAACAGTCATCTGAGTGGTTTGTTCCTAGGATAGTGTCTACTCCTATTGAAATAAAAGCTGATGTCTCTGATACTGAAACCCATGTTTGGAAATTAGTGGAGCTGTTAAAGAGCGATGCTCTTGATATTAAGAGAGAGGCAACAGCAGAACTCCGCCTTCTTGCTAAGCACAATATGGATAATCGGAATGTGATTTCAAATTGTGGAGCCATTAGCTTATTAGTTGATTTACTTCAATCAACTGATACTACAATCCAGGAAAATTCTGTTACAGCACTACTTAACTTGTCAATCAATGATAACAACAAAGCTGCTATTGCAAATGCTGGTGCAATTGAACCTTTGATTCATGTCCTTAAGACAGGGAGTCCAGAAGCTATGGAGAATTCAGCTGCCACTCTTTTCAGCCTTTCAGTTACTGAGGAAAACAAGATCAGGATAGGGAGGTCTGGGGCAATTATACCACTGGTTGATTTATTAGGGAACGGAACCCCTAGGGGGAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGGATCAGATTGTGCAAGCCGGTGCTGTGAAACACCTTGTAGAGTTAATGGACCCTGCAGCTGGAATGGTTGATAAGGCGGTGGCTGTTTTAGCAAATCTTGCTACAATACCAGAAGGGAAAGTAGCAATTGGTCAGCAAGGGGGGATTCCTGTTCTGGTTGAGGTAATTGAGTTGGGTTCTGCAAGAGGGAAGGAGAACGCAACAGCGGCTCTTCTACATCTATGCTCAGACAACCACAAATATTTAAACATGGTGCTCCAAGAAGGAGCTGTGCCCCCTTTAGTAGCATTGTCACAATCAGGCACCCCAAGGGCCAAAGAGAAGgCCTTGGCTCTCCTTAATCtatttagaagccaaagacatGGTAGTGCTGGGAGGGCTTGA 2343 0.4102 MEISLLKVLSDAISSFSHLSFSEKMKLEPVSKYYQKTEKMLKLLKLSIDTTVFSDLASNEVLSKQFEELTLAVDELRELILNWHPLSSKFYFVIQVDPLISTIQALGLSILQELKASPQCLPDNLGNETSFAIKEAIMEQLEGVEPSSEVLENIAENLGLRSNQEVLFEAVALEKLKENAEQIENTAEAEYIDQMISVVNRMHEHLVMLKQAQSSIPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLIVCPKTRQTLVHTNLIPNYTVKALIANWCESNNVKLVDPIKSKNLNQLSPFHGSMESALTKDSPVITCGEIQQEGTSTLHPCSTLGGSLNGMVNGQHVDLERTSLAGSDDGSTNSDEGSVDSVGQSLMSPSRRESFNTLSSEQSQTDVNHVRTTSDNNNAPQLSTSPVHSQDASGELNSGPDAVAMPTWHREPEFSPQLAMPRSQSQTVWQQSSEWFVPRIVSTPIEIKADVSDTETHVWKLVELLKSDALDIKREATAELRLLAKHNMDNRNVISNCGAISLLVDLLQSTDTTIQENSVTALLNLSINDNNKAAIANAGAIEPLIHVLKTGSPEAMENSAATLFSLSVTEENKIRIGRSGAIIPLVDLLGNGTPRGKKDAATALFNLSIFHENKDQIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGKVAIGQQGGIPVLVEVIELGSARGKENATAALLHLCSDNHKYLNMVLQEGAVPPLVALSQSGTPRAKEKALALLNLFRSQRHGSAGRA 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2757 780 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 578 620 IPR000225 GO:0005515
Ssu6g2757 780 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 619 661 IPR000225 GO:0005515
Ssu6g2757 780 SMART arm_5 689 729 IPR000225 GO:0005515
Ssu6g2757 780 SMART arm_5 526 566 IPR000225 GO:0005515
Ssu6g2757 780 SMART arm_5 731 770 IPR000225 GO:0005515
Ssu6g2757 780 SMART arm_5 567 607 IPR000225 GO:0005515
Ssu6g2757 780 SMART arm_5 649 688 IPR000225 GO:0005515
Ssu6g2757 780 SMART arm_5 608 648 IPR000225 GO:0005515
Ssu6g2757 780 MobiDBLite consensus disorder prediction 362 445 - -
Ssu6g2757 780 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 467 776 - -
Ssu6g2757 780 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 355 - -
Ssu6g2757 780 SMART Ubox_2 223 286 IPR003613 GO:0004842|GO:0016567
Ssu6g2757 780 SUPERFAMILY ARM repeat 497 769 IPR016024 -
Ssu6g2757 780 Pfam Armadillo/beta-catenin-like repeat 567 606 IPR000225 GO:0005515
Ssu6g2757 780 Pfam Armadillo/beta-catenin-like repeat 528 565 IPR000225 GO:0005515
Ssu6g2757 780 Pfam Armadillo/beta-catenin-like repeat 609 647 IPR000225 GO:0005515
Ssu6g2757 780 Pfam Armadillo/beta-catenin-like repeat 651 687 IPR000225 GO:0005515
Ssu6g2757 780 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 294 IPR013083 -
Ssu6g2757 780 Gene3D - 480 777 IPR011989 -
Ssu6g2757 780 PANTHER U BOX DOMAIN-CONTAINING 467 776 - -
Ssu6g2757 780 PANTHER U BOX DOMAIN-CONTAINING 9 355 - -
Ssu6g2757 780 Coils Coil 59 79 - -
Ssu6g2757 780 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 660 701 IPR000225 GO:0005515
Ssu6g2757 780 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 537 579 IPR000225 GO:0005515
Ssu6g2757 780 CDD RING-Ubox_PUB 224 266 IPR045210 -
Ssu6g2757 780 MobiDBLite consensus disorder prediction 364 435 - -
Ssu6g2757 780 Pfam U-box domain 220 290 IPR003613 GO:0004842|GO:0016567
Ssu6g2757 780 SUPERFAMILY RING/U-box 209 297 - -
Ssu6g2757 780 ProSiteProfiles U-box domain profile. 219 293 IPR003613 GO:0004842|GO:0016567
Ssu6g2757 780 Coils Coil 170 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2757 Ssu-Chr6 64041136 64043702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2757 180 780 U-box Gene Family AT2G23140 60.187 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2757 - - gmx:100777715 1259.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1285 9 46677442 46684940 Ssu6g2757 6 64041136 64043702 PCT