Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2746 ATGCCTTCAACTGCCTTAAAATGGCTAAGTCTTGTGGGCATCATTTGGCTCCAATCCATAAGTGGGACAAACACCAATTTCCCTGCTTACTCCTCCCAGCTGAAGCAACTCCTTTCCATGTCCCAATTCCAGCTCAATAACCTTGCTTTTGCCTCTGATGCAGGCAAACTTTTTGGCTTCTTTTCTGGCCTGGCTGCTGTTTACCTCCCCCTTTGGCTTGTCCTCATGATCGGCTCAACTCTTGGGTTAGTTGGTTATGGTGTGCAATATCTCTTCATTACAAACCAAATTTCCTCTCTCTCCTATTGGCATGTCTTCCTGCTAACTGTTCTAGCAGGGAACAGCATTTGTTGGATCAACACTGTGTGCTATGTGGTCACAATAAGGAACTTCCCATCTCATCGCCAAGTTGCTGTGGGGCTAACAACAAGTTACCAAGGTTTAAGTGCGAAGATTTATTCCAGCATTGTTGATGCTGTTCCTGGACACAAAAAGGCTAAAACATTTCTCTTTCTAAACTCGGTCTTACCTGTGATAGTTGGCCTAATAGCAGCTCCTGTGGTCAGAGAAATTGAAGTCACCAGGCCTGAACACACGGCTGTTGGATTTGTTGTTATGTTTGTTATTACAATTGCCACTGGAATATACGCTGTGATGAGCAGCTTGCAATTTGTCTCAAGTAAAATATCTCCATTTGGTAACCTTATTGGTGTGCTAGTGTCCCTTCTCTTCCCTCTATTAGTTCCACTTTCCGTTAAGATCAATGCACTAGTAGGGTCATGgcacaaaaatagagaaaaacaaagagtCTATCATTTTACAGCGGAGGAGGGTCAAAATGAAGAGAGGATAGAGAATGAGTTGAAAGAGGGTGGAGAAGTTCAAGAGGTTGGTGTAAGAGAAGAAATAGGAGTAAAATTGATGCTCATAAGAATAGATTTCTGGTTATATTTCTTTGTCTACTTATTTGGTGCAACACTGGGTTTAGTATATCTTAATAACTTGGGACAAATAGCTGAATCCCGGGCTTACTCTGGTACTTCATCATTGGTGTCTTTGTCTTCTTCCTTTGGATTCTTTGGTCGTCTCATGCCATCTATTGTGGACTACTTTTACAGGGGTAAGTGTACAATATCAAGACCAGCTTCTGTGGTGGCATTAATGGCTCCAACTGCAGGGGCATTTTTCTTACTACTGAACAAAACTCACCTTGCCCTCTACGTTAGCACTGCCATAATTGGAGTGTGCACTGGAGCAATCGCTTCCATTTCTGTGTCCACCACCACCGAGTTATTTGGAACCAAGAATTTCTCTGTCAACCATAATTTTGTGGTGGCCAACATTCCTGTGGGGTCCTTTCTGTTTGGCTACTTAGCTGCCCTTGTTTACAATAAAGGAGTGCATGAACAGGGAAAATGCATGGGCACGGAATGCTACAGGAACACTTTCATCATCTGGGGTTGCCTTTGTCTCTTCGGTACTTTTTTGGCTTTTATTCTACATGCTAGGACTCGCAAGTTTTACTCACAAAAACTATAg 1539 0.4211 MPSTALKWLSLVGIIWLQSISGTNTNFPAYSSQLKQLLSMSQFQLNNLAFASDAGKLFGFFSGLAAVYLPLWLVLMIGSTLGLVGYGVQYLFITNQISSLSYWHVFLLTVLAGNSICWINTVCYVVTIRNFPSHRQVAVGLTTSYQGLSAKIYSSIVDAVPGHKKAKTFLFLNSVLPVIVGLIAAPVVREIEVTRPEHTAVGFVVMFVITIATGIYAVMSSLQFVSSKISPFGNLIGVLVSLLFPLLVPLSVKINALVGSWHKNREKQRVYHFTAEEGQNEERIENELKEGGEVQEVGVREEIGVKLMLIRIDFWLYFFVYLFGATLGLVYLNNLGQIAESRAYSGTSSLVSLSSSFGFFGRLMPSIVDYFYRGKCTISRPASVVALMAPTAGAFFLLLNKTHLALYVSTAIIGVCTGAIASISVSTTTELFGTKNFSVNHNFVVANIPVGSFLFGYLAALVYNKGVHEQGKCMGTECYRNTFIIWGCLCLFGTFLAFILHARTRKFYSQKL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2746 512 Gene3D MFS general substrate transporter like domains 192 504 IPR036259 -
Ssu6g2746 512 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 3 511 - -
Ssu6g2746 512 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 3 511 - -
Ssu6g2746 512 CDD MFS_Mch1p_like 6 494 - -
Ssu6g2746 512 SUPERFAMILY MFS general substrate transporter 11 506 IPR036259 -
Ssu6g2746 512 Pfam Nodulin-like 7 250 IPR010658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2746 Ssu-Chr6 63846921 63848652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2746 1 511 Nodulin-like Gene Family AT2G30300 48.092 8.46e-152 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2746 - - gmx:100808034 833.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2746 6 63846921 63848652 Ssu6g2746 6 63846921 63848652 ECH
Ssu9g1277 9 46436316 46438443 Ssu6g2746 6 63846921 63848652 PCT