Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu6g2728 | ATGGCATCTTCTTCTGGTAGTTTAGACACCTCTGAAAGTGCAAACTCCTTCACCAACTTCACCTTCTCCACACACCCATTCATGACCACTTCCTTCTCTGACCTTCTTGCTTCTCCCACAGACAACAAGCCTCAGGGCTTGTATGAGAGAACTGGGTCTGGTGTGCCAAAATTCAAGTCCACACCACCGCCTTCTTTGCCTCTCTCTCCTCCTCCCATTTCTCCTTCTTCTTACTTTGCTATTCCACCTGGTTTGAGCCCTGCCGAGCTTCTTGACTCGCCGGTTCTCCTTAACTCTTCTAACATTCTGCCATCTCCAACAACTGGAGCATTTGTTTCTCAGAGCTTCAATTGGAAGAGCAGTTCCGGGGGGAACCAGCAAATTGTCAAAGAAGAAGACAAAAGCTTCTCAAATTTCTCTTTCCAAACCCAACCTGGACCTCCTGCTTCATCCACAGCAACATATCATTCTTCAAACGTTTCAGTTCAAACACAACAGCCATGGAGTTTTCAGGAGGCCACAAAGCAGGATAGTTTTTGTTCAGGGAAGAGTATGATGAAAACTGAAAACTCTTCTTCCATGCAGAGTTTTTCCCCTGAGATTGCTAGTGTCCAAACTAACCATAGCAATGGGTTTCAATCGGATTATGGCAATTACCCCCCACAATCTCAGACCTTAAGTAGAAGGTCAGATGATGGGTACAATTGGAGGAAATATGGCCAAAAACAAGTGAAGGGAAGTGAAAATCCAAGAAGTTATTACAAATGCACATACCCAAATTGCCCTACTAAGAAAAAGGTTGAGAGGTCTTTAGATGGACAAATTACTGAGATAGTTTATAAGGGTACTCATAACCATCCCAAGCCTCAATCTACTAGGAGAAACTCATCATCTGCCTCTTCTCTTGCAATCCCTCCTTCAAATCCCATCAGCACTGAAATCCCAGATCAATCGTATGCCACACATGGCAGTGGACAAATGGATTCGGCTGCCACTCCAGAAAACTCATCAATATCAATAGGAGATGATGATTTTGAGCAGAGTTCCCGGAAGTGTAAATCAGGAGGAGATGAGTTTGATGAAGATGAACGTGATGCCAAAAGATGGAAAATTGAAGGTGAAAATGAGGGTATGTCAGCACCTGGAAGTAGAACAGTGAGAGAACCTAGGGTTGTAGTTCAGACAACCAGTGACATTGATATCCTAGATGATGGATACAGATGGAGAAAATACGGGCAGAAAGTCGTGAAGGGTAATCCAAATCCAAGGAGTTACTACAAGTGTACACATCCAGGATGTCCCGTGAGGAAGCACGTGGAACGAGCCTCACATGACCTAAGGGCTGTGATCACAACCTATGAAGGAAAGCACAACCATGATGTTCCTGCAGCCCGTGGCAGTGGCAACCATTCTGTTAACAGACCACTGCCAAACAATGCTTCAAACCCCACCACTGCATCCACTGCCATAAGGCCCTTGCCAGTGATCCACCATACTGACAACTCCCTTCAGAGTCAAAGACTACAAGCACCCCAGAAGGGCAATCACCCTTCACCCTAG | 1560 | 0.4532 | MASSSGSLDTSESANSFTNFTFSTHPFMTTSFSDLLASPTDNKPQGLYERTGSGVPKFKSTPPPSLPLSPPPISPSSYFAIPPGLSPAELLDSPVLLNSSNILPSPTTGAFVSQSFNWKSSSGGNQQIVKEEDKSFSNFSFQTQPGPPASSTATYHSSNVSVQTQQPWSFQEATKQDSFCSGKSMMKTENSSSMQSFSPEIASVQTNHSNGFQSDYGNYPPQSQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQSTRRNSSSASSLAIPPSNPISTEIPDQSYATHGSGQMDSAATPENSSISIGDDDFEQSSRKCKSGGDEFDEDERDAKRWKIEGENEGMSAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGNHSVNRPLPNNASNPTTASTAIRPLPVIHHTDNSLQSQRLQAPQKGNHPSP | 519 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu6g2728 | 519 | SUPERFAMILY | WRKY DNA-binding domain | 394 | 462 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Ssu6g2728 | 519 | MobiDBLite | consensus disorder prediction | 344 | 374 | - | - | |
Ssu6g2728 | 519 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 44 | 510 | IPR044810 | GO:0003700 | |
Ssu6g2728 | 519 | MobiDBLite | consensus disorder prediction | 33 | 47 | - | - | |
Ssu6g2728 | 519 | MobiDBLite | consensus disorder prediction | 455 | 491 | - | - | |
Ssu6g2728 | 519 | MobiDBLite | consensus disorder prediction | 207 | 234 | - | - | |
Ssu6g2728 | 519 | MobiDBLite | consensus disorder prediction | 285 | 343 | - | - | |
Ssu6g2728 | 519 | SMART | WRKY_cls | 402 | 461 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Ssu6g2728 | 519 | SMART | WRKY_cls | 230 | 288 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Ssu6g2728 | 519 | MobiDBLite | consensus disorder prediction | 33 | 73 | - | - | |
Ssu6g2728 | 519 | MobiDBLite | consensus disorder prediction | 280 | 385 | - | - | |
Ssu6g2728 | 519 | PANTHER | WRKY TRANSCRIPTION FACTOR WRKY24-LIKE | 44 | 510 | - | - | |
Ssu6g2728 | 519 | MobiDBLite | consensus disorder prediction | 471 | 489 | - | - | |
Ssu6g2728 | 519 | Gene3D | WRKY domain | 389 | 455 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Ssu6g2728 | 519 | MobiDBLite | consensus disorder prediction | 207 | 230 | - | - | |
Ssu6g2728 | 519 | ProSiteProfiles | WRKY domain profile. | 231 | 289 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Ssu6g2728 | 519 | ProSiteProfiles | WRKY domain profile. | 397 | 462 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Ssu6g2728 | 519 | SUPERFAMILY | WRKY DNA-binding domain | 229 | 289 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Ssu6g2728 | 519 | Pfam | WRKY DNA -binding domain | 403 | 459 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Ssu6g2728 | 519 | Pfam | WRKY DNA -binding domain | 231 | 287 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Ssu6g2728 | 519 | Gene3D | WRKY domain | 218 | 290 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu6g2728 | Ssu-Chr6 | 63236106 | 63238608 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu6g2728 | 55 | 506 | WRKY Transcription Factor Family | AT2G38470 | 48.913 | 4.90e-115 | 348 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Ssu6g2728 | WRKY | 1.4e-25 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu6g2728 | K13424 | - | gmx:100127393 | 930.628 |