Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2728 ATGGCATCTTCTTCTGGTAGTTTAGACACCTCTGAAAGTGCAAACTCCTTCACCAACTTCACCTTCTCCACACACCCATTCATGACCACTTCCTTCTCTGACCTTCTTGCTTCTCCCACAGACAACAAGCCTCAGGGCTTGTATGAGAGAACTGGGTCTGGTGTGCCAAAATTCAAGTCCACACCACCGCCTTCTTTGCCTCTCTCTCCTCCTCCCATTTCTCCTTCTTCTTACTTTGCTATTCCACCTGGTTTGAGCCCTGCCGAGCTTCTTGACTCGCCGGTTCTCCTTAACTCTTCTAACATTCTGCCATCTCCAACAACTGGAGCATTTGTTTCTCAGAGCTTCAATTGGAAGAGCAGTTCCGGGGGGAACCAGCAAATTGTCAAAGAAGAAGACAAAAGCTTCTCAAATTTCTCTTTCCAAACCCAACCTGGACCTCCTGCTTCATCCACAGCAACATATCATTCTTCAAACGTTTCAGTTCAAACACAACAGCCATGGAGTTTTCAGGAGGCCACAAAGCAGGATAGTTTTTGTTCAGGGAAGAGTATGATGAAAACTGAAAACTCTTCTTCCATGCAGAGTTTTTCCCCTGAGATTGCTAGTGTCCAAACTAACCATAGCAATGGGTTTCAATCGGATTATGGCAATTACCCCCCACAATCTCAGACCTTAAGTAGAAGGTCAGATGATGGGTACAATTGGAGGAAATATGGCCAAAAACAAGTGAAGGGAAGTGAAAATCCAAGAAGTTATTACAAATGCACATACCCAAATTGCCCTACTAAGAAAAAGGTTGAGAGGTCTTTAGATGGACAAATTACTGAGATAGTTTATAAGGGTACTCATAACCATCCCAAGCCTCAATCTACTAGGAGAAACTCATCATCTGCCTCTTCTCTTGCAATCCCTCCTTCAAATCCCATCAGCACTGAAATCCCAGATCAATCGTATGCCACACATGGCAGTGGACAAATGGATTCGGCTGCCACTCCAGAAAACTCATCAATATCAATAGGAGATGATGATTTTGAGCAGAGTTCCCGGAAGTGTAAATCAGGAGGAGATGAGTTTGATGAAGATGAACGTGATGCCAAAAGATGGAAAATTGAAGGTGAAAATGAGGGTATGTCAGCACCTGGAAGTAGAACAGTGAGAGAACCTAGGGTTGTAGTTCAGACAACCAGTGACATTGATATCCTAGATGATGGATACAGATGGAGAAAATACGGGCAGAAAGTCGTGAAGGGTAATCCAAATCCAAGGAGTTACTACAAGTGTACACATCCAGGATGTCCCGTGAGGAAGCACGTGGAACGAGCCTCACATGACCTAAGGGCTGTGATCACAACCTATGAAGGAAAGCACAACCATGATGTTCCTGCAGCCCGTGGCAGTGGCAACCATTCTGTTAACAGACCACTGCCAAACAATGCTTCAAACCCCACCACTGCATCCACTGCCATAAGGCCCTTGCCAGTGATCCACCATACTGACAACTCCCTTCAGAGTCAAAGACTACAAGCACCCCAGAAGGGCAATCACCCTTCACCCTAG 1560 0.4532 MASSSGSLDTSESANSFTNFTFSTHPFMTTSFSDLLASPTDNKPQGLYERTGSGVPKFKSTPPPSLPLSPPPISPSSYFAIPPGLSPAELLDSPVLLNSSNILPSPTTGAFVSQSFNWKSSSGGNQQIVKEEDKSFSNFSFQTQPGPPASSTATYHSSNVSVQTQQPWSFQEATKQDSFCSGKSMMKTENSSSMQSFSPEIASVQTNHSNGFQSDYGNYPPQSQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQSTRRNSSSASSLAIPPSNPISTEIPDQSYATHGSGQMDSAATPENSSISIGDDDFEQSSRKCKSGGDEFDEDERDAKRWKIEGENEGMSAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGNHSVNRPLPNNASNPTTASTAIRPLPVIHHTDNSLQSQRLQAPQKGNHPSP 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2728 519 SUPERFAMILY WRKY DNA-binding domain 394 462 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g2728 519 MobiDBLite consensus disorder prediction 344 374 - -
Ssu6g2728 519 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 44 510 IPR044810 GO:0003700
Ssu6g2728 519 MobiDBLite consensus disorder prediction 33 47 - -
Ssu6g2728 519 MobiDBLite consensus disorder prediction 455 491 - -
Ssu6g2728 519 MobiDBLite consensus disorder prediction 207 234 - -
Ssu6g2728 519 MobiDBLite consensus disorder prediction 285 343 - -
Ssu6g2728 519 SMART WRKY_cls 402 461 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g2728 519 SMART WRKY_cls 230 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g2728 519 MobiDBLite consensus disorder prediction 33 73 - -
Ssu6g2728 519 MobiDBLite consensus disorder prediction 280 385 - -
Ssu6g2728 519 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 44 510 - -
Ssu6g2728 519 MobiDBLite consensus disorder prediction 471 489 - -
Ssu6g2728 519 Gene3D WRKY domain 389 455 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g2728 519 MobiDBLite consensus disorder prediction 207 230 - -
Ssu6g2728 519 ProSiteProfiles WRKY domain profile. 231 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g2728 519 ProSiteProfiles WRKY domain profile. 397 462 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g2728 519 SUPERFAMILY WRKY DNA-binding domain 229 289 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g2728 519 Pfam WRKY DNA -binding domain 403 459 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g2728 519 Pfam WRKY DNA -binding domain 231 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g2728 519 Gene3D WRKY domain 218 290 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2728 Ssu-Chr6 63236106 63238608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2728 55 506 WRKY Transcription Factor Family AT2G38470 48.913 4.90e-115 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu6g2728 WRKY 1.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2728 K13424 - gmx:100127393 930.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2728 6 63236106 63238608 Ssu6g2728 6 63236106 63238608 ECH
Ssu9g1267 9 46307645 46310415 Ssu6g2728 6 63236106 63238608 PCT