Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2722 ATGGAGAGTTGGGGGATTTATGTCAAGTGTGATTGGACTAATCTGTTATGCGTTGAGTTCCTCTTTCAACCATCTATTTGGAGAGTGGACCTTCTTGAAGATCATCCTTTACACCGTGGGATGGAAGACCATGAACCCATAGAAATTGATGCTGCAAATGGAGGAGAAAGAGGAGCTGATGAGAACAGAAGTGATTTCCAATCTAATCATAGCAATGGCCACCAACAAATTCCGTCGTTAAGAAGGTTGGGTGACGGGTACAACTGGAAAAAATATGAAGATAAAGTAGTAAAAGGAAGTGAAAATCAGGTAAGTTACTACAAATGCACACACCCCAATTGCTAtgtgaagaaaaaagttaagagAACTTTAGACGGCGAAATTATTGAGATACACTACCAGGGTACCCACACCCATCACGAGGCTAAGCATACAATGAAGCGGAACTACTCATCTGAATATTTATATTCACTGTTACCTTCAGAGCCTGTCACCACTTACTTGCCTGATCAATCATTTGCCTCCCAGGGCAGTGGACAATTGGATTATGATGTGCAGCACCGGAGAACTCCTCAATATCCAAATGAAATATGA 594 0.404 MESWGIYVKCDWTNLLCVEFLFQPSIWRVDLLEDHPLHRGMEDHEPIEIDAANGGERGADENRSDFQSNHSNGHQQIPSLRRLGDGYNWKKYEDKVVKGSENQVSYYKCTHPNCYVKKKVKRTLDGEIIEIHYQGTHTHHEAKHTMKRNYSSEYLYSLLPSEPVTTYLPDQSFASQGSGQLDYDVQHRRTPQYPNEI 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2722 197 SMART WRKY_cls 83 141 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g2722 197 PANTHER WRKY TRANSCRIPTION FACTOR 33-RELATED 64 150 - -
Ssu6g2722 197 MobiDBLite consensus disorder prediction 52 80 - -
Ssu6g2722 197 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 64 150 IPR044810 GO:0003700
Ssu6g2722 197 Pfam WRKY DNA -binding domain 85 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g2722 197 SUPERFAMILY WRKY DNA-binding domain 80 140 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g2722 197 ProSiteProfiles WRKY domain profile. 78 142 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g2722 197 Gene3D WRKY domain 70 142 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2722 Ssu-Chr6 63104277 63105249 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2722 61 139 WRKY Transcription Factor Family AT2G38470 55.696 3.71e-21 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu6g2722 WRKY 2e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2722 K13424 - ccaj:109792596 251.136