Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2720 atgactCCTTTGCCGCAGGTAGCGGTGTGGAGATTCGTTGGTTTTGTTTCAACTATTGTTGGACTACTTTGTTACGCTCTCAGCACCTCCTTCAACTATTTATTCGGAGACTGGAACTTGTTGAAGATTTTTCTTTACAGTGCTTTTAGTTTCTTCATCTGCCTCTGGAGTCTGTTTGCAAAGGTATGTCAACGCTCAACGAGTCTTCGATTCAAAGCTCATTCAGCATTCTTGGTTTTGACCATCACATCTGTGTATTCCTATTTCGCTGATAAAGCTGTGAATGGGAAACCAGATGCATATAGCTTGATTTCATGTGTTGCCTTTGCTATCATGTCACTCAGCTTGTCAAGGCAAACTCAGTGCGGATTTGAAGCggatcttttttactttttcctgGGATGTCTAATAGTACTACTCATGAAGATTAATTTGGCTTTAGCTATTGTTGGAGTAGGTCTCAGCTATTTCCTTATTATTCTTCGTTCCTCCTTAGATACCACTTCATACCAGAATCTTGGAGTCCAAGATGATTCAGTAGTGATTGATGTCAATGCTAGAATGATGCAACGACTCACGACTTGTATCAATGCTCTTCAGCAGGGCAACTCGAATCCCACCAACGTGCTTTTGGAGCGTGCGAAGGAATACCTTAAAGATAAATCTGAACTAGAAGGTATCGACCATAACTTTTTGATCGATGCGCTACCATCGGAAAAAATCCACGACCTCCGAGAAAGTATAAACCTGATGGTGGGCGATGTGGTTGAGAAAACGTGCTGCGAGGTGTATTGTAATTGGCGGAGGGAAAGCTTAGAGGCGTGCTTATTTGAGCTGCAAAAGATTGTGATCGACGAGAAACGTCCAAGGTTGCCATTAGACTGGGACgttgataaaatattgattagaaCTCTGAAGGCCGCTCTTAGGATACTATTTCCCAGTGAGCGACGACTCTGTGATCGCGTCTTCTCTGGGTTCCCTCCTGTCGCTGATTTCTGTTTCACTGAGGTTTGTCGGGGACCCGTGGTTACAATGCTGAATTTTGCCGATTATTATGCAAGCAGGGACCCTTGCGAGGTGGGTTTGTCCAATATTCTAGTCATGTTTGAGACGTTGTGTGACCTAATTCCTGAATTTCATTCATTGTTTCCAGAGTCGCTGGTGAAGGAAGCAGTGACAGTCCGCGACAAGTTAGAAAAAGCATGCAGGGACGTTTTCATGAAAATGGAAGATAAGATTTTTTGTAACCCATTTGTGAAGATAGTTGTTCGGCCAGATGCCACGGATCATCCAATGACCCGTTGTGTCATGGACTACTTGGAGctgattttagaaaaataccGTAAGTTTGCTGATAGAACGGGAACGTCTTCTTCAGTTTCTGATCAGATTAATCCAATAATGAAGCGATTGGAGAGAGAACTGGTGGCAAGGTCCAAAATCTACAGTCACCCTGCTTTACGCCACCTTTTCATGATGAATAATTGGAGTTACATAGAGCGAAGGGCAGCGAAGTTGGGATTAGACGACCTTGATTTTTTCCAAAATAGCGCCACAATAGTTCGACAAAACCTCGTACATTATCAAAGAAGCTCTTGGAAAATGGTGCTAGACTTTTTGAAGCTAGAGGACGATGAGTTAGTGGATGCAGAGTCTATCAAAGACAACCTCATCAACGAGCACATTGAGTTTATATGTGGCAATCAATCTACATGGCTTGCCTATGAAGATATGCTAAGTGaacaacaattaataatacCAATTGTTGACGACAGTAAAAACCAACAAGGTACCTGGGTCCCTTAG 1809 0.414 MTPLPQVAVWRFVGFVSTIVGLLCYALSTSFNYLFGDWNLLKIFLYSAFSFFICLWSLFAKVCQRSTSLRFKAHSAFLVLTITSVYSYFADKAVNGKPDAYSLISCVAFAIMSLSLSRQTQCGFEADLFYFFLGCLIVLLMKINLALAIVGVGLSYFLIILRSSLDTTSYQNLGVQDDSVVIDVNARMMQRLTTCINALQQGNSNPTNVLLERAKEYLKDKSELEGIDHNFLIDALPSEKIHDLRESINLMVGDVVEKTCCEVYCNWRRESLEACLFELQKIVIDEKRPRLPLDWDVDKILIRTLKAALRILFPSERRLCDRVFSGFPPVADFCFTEVCRGPVVTMLNFADYYASRDPCEVGLSNILVMFETLCDLIPEFHSLFPESLVKEAVTVRDKLEKACRDVFMKMEDKIFCNPFVKIVVRPDATDHPMTRCVMDYLELILEKYRKFADRTGTSSSVSDQINPIMKRLERELVARSKIYSHPALRHLFMMNNWSYIERRAAKLGLDDLDFFQNSATIVRQNLVHYQRSSWKMVLDFLKLEDDELVDAESIKDNLINEHIEFICGNQSTWLAYEDMLSEQQLIIPIVDDSKNQQGTWVP 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2720 602 Pfam Exo70 exocyst complex subunit 302 582 IPR046364 GO:0000145|GO:0005546|GO:0006887
Ssu6g2720 602 Gene3D Exocyst complex component Exo70 182 589 - -
Ssu6g2720 602 PANTHER PROTEIN, PUTATIVE-RELATED 8 585 - -
Ssu6g2720 602 PANTHER EXOCYST COMPLEX PROTEIN EXO70 8 585 IPR004140 GO:0000145|GO:0006887
Ssu6g2720 602 Coils Coil 541 561 - -
Ssu6g2720 602 SUPERFAMILY Cullin repeat-like 189 575 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2720 Ssu-Chr6 63069003 63070811 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2720 228 588 EXO70 exocyst subunit family AT5G58430 38.422 1.97e-63 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2720 - - gmx:100788866 674.855