Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2718 ATGGCGGTTCCTGGTGGCGGGCTTCATCCGATTACTCGCTATATGATGAACTACCTCTGTGCCGCTTGCCAGTCACGGCAGGCCTTGGAGCAAGTTTTTGAAAACTGCGGACATCCGTTGAAAGAGCATTCCAAGCTTGATAATAAAGCACCCTCTTCTTCCTGTCTGTCATTGCAAATGGGTTGGATTATGAAGCTGTTGGAGAGCAATTTGAAAGCAAAGTCCAAGATCTACAAGGACCCTGCTTTGTTCTATGTTTTCTTGATGAATAATAGCAGTGGCTCAGTGCCCCTTAATCGCTTAGCAAAGTCAATGAAAGAGAAGCTCAAGTCATTTAACGCACTGTTCGAGGAGATATGCAGGGAACAAGCTTCGTGGTTTGTCTTTGATGAGCAGCTTAgggaagaaataagaatatcgCTTGAGAAAATCTTGTTGCCAGCGTATGGAAACTTTGTTGGGAGGTTCCAGAGTATTCCGGAACTTGGTAAGCATGCTGATAAGTACATTAAGTATGGAACAGAGGACATTCAAGCAAGACTCAATGATTTGTTTCAGGGAAGCGGTAGATCAACTGGTAAGCGAAAGTGA 591 0.4298 MAVPGGGLHPITRYMMNYLCAACQSRQALEQVFENCGHPLKEHSKLDNKAPSSSCLSLQMGWIMKLLESNLKAKSKIYKDPALFYVFLMNNSSGSVPLNRLAKSMKEKLKSFNALFEEICREQASWFVFDEQLREEIRISLEKILLPAYGNFVGRFQSIPELGKHADKYIKYGTEDIQARLNDLFQGSGRSTGKRK 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2718 196 PANTHER EXOCYST COMPLEX PROTEIN EXO70 2 92 IPR004140 GO:0000145|GO:0006887
Ssu6g2718 196 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 2 92 - -
Ssu6g2718 196 Gene3D Exocyst complex component Exo70 1 93 - -
Ssu6g2718 196 Gene3D Exocyst complex component Exo70 94 189 - -
Ssu6g2718 196 Pfam Exo70 exocyst complex subunit 103 183 IPR046364 GO:0000145|GO:0005546|GO:0006887
Ssu6g2718 196 Pfam Exo70 exocyst complex subunit 3 92 IPR046364 GO:0000145|GO:0005546|GO:0006887
Ssu6g2718 196 SUPERFAMILY Cullin repeat-like 3 185 IPR016159 -
Ssu6g2718 196 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 96 189 - -
Ssu6g2718 196 PANTHER EXOCYST COMPLEX PROTEIN EXO70 96 189 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2718 Ssu-Chr6 63034553 63035297 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2718 2 195 EXO70 exocyst subunit family AT5G58430 48.571 2.09e-72 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2718 K07195 - gmx:100803694 291.582