Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2713 ATGTACCCTGAAAACCTAGAAGCTAAACTCATAGAGGCAATGGCTTCTGGGTTTATGCAGGAACACTGCTACCACGTTTTCTGCGATTGGCGAAGACAATTCTTGGAGGAAAAGCTGTTGCAGGACCTCGTGAGTGTAGAAGAGGTGCACAAGATGCCACTGAAATATCTTAAAGACCCAACTGAACGCTGGATCAAAGCTTCCAAAGATGCTTTCAGGACATTATTCCCGAGTGAATGGAATCTCTGCAATCGAGTCTTTGGGTTCTTTCCTTTTGCTAAACGCTCTTTCATGGTGCTTTGCCATGAACCCACCATTTATCTACTGAATTTTGCCTATGCCGTGGCAAGTAGGAAAAGTCGGTCACCAGAGCGTTTGTTTAGAATAGTTTCTGTGTTGGAGACTCTAAATTACCTGTTACCTGATTTGGAGTCACTATTCTCGGGTAATGAGTGCGGTGTGGTTCTTTTGAACGAGGCAAATAGAATCTGTAAAGCGTTGAGAGAAGATATTAGAGGGGTTTTCATGGAGATGGAGAATCTAATTCGTCAGGACCCGGCAAAGGTGGTTGTTTCCGGTGGTGGGCTTCATCCAACTAACCGCTATGTTATGAACTACCTCTTTGCTGCTTGTAAATGTTGGAACACCCTTGAGCTTGCCTTTGAAGGGTCGTCGTCATCATCATTGTCCCTCCACGTGGCTCAGATTTTGGAGGTGTTAGAGAGAAGTTTGAAAGCAAACTCCAAAGTCTACAAGGACTCTTCCTTGTGCTTCATCTTCATGATGAATAATTGGAGGTACATAGTTCACAAGGTCAAAAAAAGTGAGTTATTAGGAAGGGTGTTAGGGGAAGACTGGATCCAGAACCACGTGGCGAAGATGGGGCAATACCTTGTGAATTACCAGAGAAGCTCGTGGGATCATGTACTTGGCATGTTGAATATAGAACCTGGTGAATCTGCAGGGTCCGAGAAAGACAAGATTGAGATGTTGAAGTTGAGATTAGAGGAGATAAGTCAGGTGCAGGGAACGTGGGTAGTCATTGATGAGCGAATACGAGAGGTCATAAAGAGATGCTTGAAGAAAACCTTGTTGCCCGCGTTTGAAAATTTCAGCGGAAGATTCCAAAAAGGTGTAGGTCCTCCAGAAGGTGTCGGCATGCATGAGGATTTTGGGGTCCAAGATGTTGCGGCTGTAATAGACAACCTATTCCAGGGAAAAGATGAACACCGAAAGCCCGGAATAATTCAGCCATCATGGGCCGTAGCTGTGCCCAGCACACAAGATTTTCATGAATGGGTGAAGTACGCTGAAAAGACAATCCTTAATTCTACACACCCAAGAAAATACTACAGGTGCATCTACAAGAATGATCAAGGTTGTCGTGCAAGAAAACACGTCCAACAAATGCATGACAATCCAAAGATGTACACAATTAGCTACTCCGGCTTTCATACATGCAATGTGCTTTGTATGATTCACAAGGCTCCGTAA 1494 0.4431 MYPENLEAKLIEAMASGFMQEHCYHVFCDWRRQFLEEKLLQDLVSVEEVHKMPLKYLKDPTERWIKASKDAFRTLFPSEWNLCNRVFGFFPFAKRSFMVLCHEPTIYLLNFAYAVASRKSRSPERLFRIVSVLETLNYLLPDLESLFSGNECGVVLLNEANRICKALREDIRGVFMEMENLIRQDPAKVVVSGGGLHPTNRYVMNYLFAACKCWNTLELAFEGSSSSSLSLHVAQILEVLERSLKANSKVYKDSSLCFIFMMNNWRYIVHKVKKSELLGRVLGEDWIQNHVAKMGQYLVNYQRSSWDHVLGMLNIEPGESAGSEKDKIEMLKLRLEEISQVQGTWVVIDERIREVIKRCLKKTLLPAFENFSGRFQKGVGPPEGVGMHEDFGVQDVAAVIDNLFQGKDEHRKPGIIQPSWAVAVPSTQDFHEWVKYAEKTILNSTHPRKYYRCIYKNDQGCRARKHVQQMHDNPKMYTISYSGFHTCNVLCMIHKAP 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2713 497 Pfam Exo70 exocyst complex subunit 62 376 IPR046364 GO:0000145|GO:0005546|GO:0006887
Ssu6g2713 497 Pfam WRKY DNA -binding domain 429 488 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g2713 497 Gene3D Exocyst complex component Exo70 3 412 - -
Ssu6g2713 497 Gene3D WRKY domain 416 482 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g2713 497 SUPERFAMILY Cullin repeat-like 10 404 IPR016159 -
Ssu6g2713 497 PANTHER EXOCYST COMPLEX PROTEIN EXO70 14 405 IPR004140 GO:0000145|GO:0006887
Ssu6g2713 497 PANTHER EXOCYST COMPLEX COMPONENT EXO70B1 14 405 - -
Ssu6g2713 497 ProSiteProfiles WRKY domain profile. 422 490 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g2713 497 SUPERFAMILY WRKY DNA-binding domain 423 488 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g2713 497 SMART WRKY_cls 427 489 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2713 Ssu-Chr6 62981322 62993240 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2713 14 412 EXO70 exocyst subunit family AT5G58430 48.558 2.33e-115 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu6g2713 Exo70 4.9e-76 CL0295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2713 K07195 - aprc:113848528 771.926