Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2709 ATGATATGCTCAGATATCACAATTGAGGTGGAGACAAGAGTTGGAACAGTGAAGGATCTTGTAGACATTCAAATTGATCCACCTTCACAATCACCAGGAATCAGTGGTGACGCTTCTCAAGTGGATTCACCCCAAGCTCATCCACAAGCTGATGCCACTCCAGTAACCCAAGTTGCTCCACGTCCACAACAACGCAATAATGATAGAGGTATTATCAGGGCCCGGTATATGGGTCATATAGAGGAGCTTAAGAAGGAGAATGAGAAGCTTATCGACACAATTTCCAGGCATGTTGGTGAATACCTTAGGGCTAATGTTGTGAACGAAGATCAGATTCTAGTGCCGGAAATGCAAGCTGATGACAACTTGGTGGCAGATGTGTTGCCGTCGGAAATTATCAACAATCTTCGTGAAACCGGGAGGCTGATGTTTCAGAACGAATGCATCAACGTGTACAGTAGTTGCCGGAGGGAGTTCCTGAAAGAGTGTCTATCAAAATTCGGGTTGCAAGTTGAAGAGCTCAACGTGGAGGACGTTGACAAGATGGAGAAGATTGAGAGTTGGATAAAAGCTTTGAACATAGCCGTGAGGATACTCTTTCCCAATGAAAGGAGTCTCTGCAATCGCGTCTTCCGGTCATCTTATGCTGCGGACCTCGGTGATCTCCGATCTTCTGCTGCGGATATCTCTTTCGGCGAGGTTTGCAGTGAATTGACTATTAGTCTGCTGAGATTTGCCAATACCTTAGCAACTGAGAGTCATTCGCCGTATCATTCGTTCCATGTCATCCCCAAAGTGTTCAAGACTTTGAGCGACCTGATTCCATATTTCAATTCATTGTTTTATGGTCAGTTGTTCAGTGAATCACTCATGAATGATGCGGTCCTTGTTGGGAAGAGATTGGGCATTTTTGTTGAGTTGGAGAGTCTTATTCGCCGTGAGGTGGCGCAGGAGACTGTTCCGGATGGTGGGATTCATCCAACTACCCACAAAGTGATGGACTACCTCAGAGATGTTTTCACAGATAACGAGAATTTTCCAATTAGAAAGGGAATATCTTCATTTTCTGACCAGAAGGctgaagagaagaaggaaaggaTACTGAAGTTTGCGAGGATTTGGAACACAAAAATTTTGTATTGCATGTCTGTGATGATTTCAACAAGTGTTCAGATTATTGGCTGGGTGCATTTGATATCGGTTTCTCTTGGTCCTTTTGTTGGGAACACATGCTTAGGAAGAAAACTGAAACAGCTCAGGGACTCCATGGAGAACCAGGGACATGGAAGAAAATAG 1296 0.436 MICSDITIEVETRVGTVKDLVDIQIDPPSQSPGISGDASQVDSPQAHPQADATPVTQVAPRPQQRNNDRGIIRARYMGHIEELKKENEKLIDTISRHVGEYLRANVVNEDQILVPEMQADDNLVADVLPSEIINNLRETGRLMFQNECINVYSSCRREFLKECLSKFGLQVEELNVEDVDKMEKIESWIKALNIAVRILFPNERSLCNRVFRSSYAADLGDLRSSAADISFGEVCSELTISLLRFANTLATESHSPYHSFHVIPKVFKTLSDLIPYFNSLFYGQLFSESLMNDAVLVGKRLGIFVELESLIRREVAQETVPDGGIHPTTHKVMDYLRDVFTDNENFPIRKGISSFSDQKAEEKKERILKFARIWNTKILYCMSVMISTSVQIIGWVHLISVSLGPFVGNTCLGRKLKQLRDSMENQGHGRK 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2709 431 Pfam Exo70 exocyst complex subunit 187 340 IPR046364 GO:0000145|GO:0005546|GO:0006887
Ssu6g2709 431 PANTHER EXOCYST COMPLEX PROTEIN EXO70 114 347 IPR004140 GO:0000145|GO:0006887
Ssu6g2709 431 MobiDBLite consensus disorder prediction 24 69 - -
Ssu6g2709 431 SUPERFAMILY Cullin repeat-like 76 340 IPR016159 -
Ssu6g2709 431 Coils Coil 73 100 - -
Ssu6g2709 431 MobiDBLite consensus disorder prediction 28 64 - -
Ssu6g2709 431 Gene3D Exocyst complex component Exo70 65 374 - -
Ssu6g2709 431 PANTHER EXOCYST COMPLEX COMPONENT EXO70B1 114 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2709 Ssu-Chr6 62856490 62859324 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2709 108 337 EXO70 exocyst subunit family AT5G58430 48.583 3.54e-59 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2709 K07195 - gsj:114376661 496.893