LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g2708	ATGACTCTGTATGCGATGTTAGATTCATCTTTCACAATTCAAGTTATTGAAATTGGTTCGCATTCACAATCACGAGGAACCAGTGATGGTGCTTCTCAAGTGGATTCACCACAAGCTATTATTACTGTTACTGGTAATGCTCATCCACAAACTGATGCCCCTCTAGAAAATGAGGATCTAGGATTCTTAGTCACGCAAATCGGTTCACAGTCAGAACCAGGACTGCATAGTGATATCAAGGGATGCTTCATGGGTTGTATAGAAGCGCTTAAGAAGGAGAATTGGAATATCATAGACACGATTTTCAAGCATGTACACGAATACCTTAAAGCTAATCTTGTGGATAAGGACCAGATTCCAGTAGGGTGGCAATTGCATCCCGATGACAACTTGGTGGTGGATTCGTTGCCGTTGGGAATTATCAACGACCTTCGTGAAAGCACAAGGCTGATGGTGACAGCAGGGTTAAAGGAGGAATGCTTACGCGGGTACATTAGTTGCCGGAGGGAGTTTCTGAAAGTGATTATATCGACATTTGCCTTGCAAAAGCTCAACACGGAGGACATTAACAAGATGGAGAAGATTCAGTGTTGGATAAAAGCTTTGAGCATCGCTGAAAGGATACTCTGGCCCAATGAAAGCAGACTCATCAAACGCGTCTTTGAAGGGTCCATTCCCTCTGAGGAAATGCGTGCATTACTCGGAATAAACGCGTTAAGGTTTCGGAGGAGTACTAGTTTTGGTATTTTTGGGGACTTGTTAAATCATACTTATGGTGATAAAGAGCAAGAAACTGCTCCCGGTGGCAGGGTTCATCCCATTACCCGTGATGTGTTGGCCTACATTGATATGATATACGGGAATCAGCAAGGTTTATTCGGCGCCATGAATCTAGCGGCATTTAATTCACCGACTGTGCTCGTAGCCACGATAACAGAGCTGTTAGAGAGCTGTTTGGAAGCCAACtccaaaatttacaaaaaccctACTTTGGGTTATGTTTTCATCATGAACAATTGGAGATTCTCATTTCTTCCAAAATTAttagatggtatcagagctccatCTTGA	1071	0.4146	MTLYAMLDSSFTIQVIEIGSHSQSRGTSDGASQVDSPQAIITVTGNAHPQTDAPLENEDLGFLVTQIGSQSEPGLHSDIKGCFMGCIEALKKENWNIIDTIFKHVHEYLKANLVDKDQIPVGWQLHPDDNLVVDSLPLGIINDLRESTRLMVTAGLKEECLRGYISCRREFLKVIISTFALQKLNTEDINKMEKIQCWIKALSIAERILWPNESRLIKRVFEGSIPSEEMRALLGINALRFRRSTSFGIFGDLLNHTYGDKEQETAPGGRVHPITRDVLAYIDMIYGNQQGLFGAMNLAAFNSPTVLVATITELLESCLEANSKIYKNPTLGYVFIMNNWRFSFLPKLLDGIRAPS	356

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu6g2708	356	Pfam	Exo70 exocyst complex subunit	244	342	IPR046364	GO:0000145\|GO:0005546\|GO:0006887
	Ssu6g2708	356	PANTHER	EXOCYST COMPLEX PROTEIN EXO70	113	342	IPR004140	GO:0000145\|GO:0006887
	Ssu6g2708	356	Gene3D	Exocyst complex component Exo70	232	344	-	-
	Ssu6g2708	356	Gene3D	Exocyst complex component Exo70	60	231	-	-
	Ssu6g2708	356	SUPERFAMILY	Cullin repeat-like	103	342	IPR016159	-
	Ssu6g2708	356	PANTHER	PROTEIN, PUTATIVE-RELATED	113	342	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu6g2708	Ssu-Chr6	62841244	62844243	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu6g2708	115	342	EXO70 exocyst subunit family	AT5G58430	33.893	1.12e-32	126

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu6g2708	-		K07195	gmx:100795016	275.789

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