Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2708 ATGACTCTGTATGCGATGTTAGATTCATCTTTCACAATTCAAGTTATTGAAATTGGTTCGCATTCACAATCACGAGGAACCAGTGATGGTGCTTCTCAAGTGGATTCACCACAAGCTATTATTACTGTTACTGGTAATGCTCATCCACAAACTGATGCCCCTCTAGAAAATGAGGATCTAGGATTCTTAGTCACGCAAATCGGTTCACAGTCAGAACCAGGACTGCATAGTGATATCAAGGGATGCTTCATGGGTTGTATAGAAGCGCTTAAGAAGGAGAATTGGAATATCATAGACACGATTTTCAAGCATGTACACGAATACCTTAAAGCTAATCTTGTGGATAAGGACCAGATTCCAGTAGGGTGGCAATTGCATCCCGATGACAACTTGGTGGTGGATTCGTTGCCGTTGGGAATTATCAACGACCTTCGTGAAAGCACAAGGCTGATGGTGACAGCAGGGTTAAAGGAGGAATGCTTACGCGGGTACATTAGTTGCCGGAGGGAGTTTCTGAAAGTGATTATATCGACATTTGCCTTGCAAAAGCTCAACACGGAGGACATTAACAAGATGGAGAAGATTCAGTGTTGGATAAAAGCTTTGAGCATCGCTGAAAGGATACTCTGGCCCAATGAAAGCAGACTCATCAAACGCGTCTTTGAAGGGTCCATTCCCTCTGAGGAAATGCGTGCATTACTCGGAATAAACGCGTTAAGGTTTCGGAGGAGTACTAGTTTTGGTATTTTTGGGGACTTGTTAAATCATACTTATGGTGATAAAGAGCAAGAAACTGCTCCCGGTGGCAGGGTTCATCCCATTACCCGTGATGTGTTGGCCTACATTGATATGATATACGGGAATCAGCAAGGTTTATTCGGCGCCATGAATCTAGCGGCATTTAATTCACCGACTGTGCTCGTAGCCACGATAACAGAGCTGTTAGAGAGCTGTTTGGAAGCCAACtccaaaatttacaaaaaccctACTTTGGGTTATGTTTTCATCATGAACAATTGGAGATTCTCATTTCTTCCAAAATTAttagatggtatcagagctccatCTTGA 1071 0.4146 MTLYAMLDSSFTIQVIEIGSHSQSRGTSDGASQVDSPQAIITVTGNAHPQTDAPLENEDLGFLVTQIGSQSEPGLHSDIKGCFMGCIEALKKENWNIIDTIFKHVHEYLKANLVDKDQIPVGWQLHPDDNLVVDSLPLGIINDLRESTRLMVTAGLKEECLRGYISCRREFLKVIISTFALQKLNTEDINKMEKIQCWIKALSIAERILWPNESRLIKRVFEGSIPSEEMRALLGINALRFRRSTSFGIFGDLLNHTYGDKEQETAPGGRVHPITRDVLAYIDMIYGNQQGLFGAMNLAAFNSPTVLVATITELLESCLEANSKIYKNPTLGYVFIMNNWRFSFLPKLLDGIRAPS 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2708 356 Pfam Exo70 exocyst complex subunit 244 342 IPR046364 GO:0000145|GO:0005546|GO:0006887
Ssu6g2708 356 PANTHER EXOCYST COMPLEX PROTEIN EXO70 113 342 IPR004140 GO:0000145|GO:0006887
Ssu6g2708 356 Gene3D Exocyst complex component Exo70 232 344 - -
Ssu6g2708 356 Gene3D Exocyst complex component Exo70 60 231 - -
Ssu6g2708 356 SUPERFAMILY Cullin repeat-like 103 342 IPR016159 -
Ssu6g2708 356 PANTHER PROTEIN, PUTATIVE-RELATED 113 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2708 Ssu-Chr6 62841244 62844243 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2708 115 342 EXO70 exocyst subunit family AT5G58430 33.893 1.12e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2708 - K07195 gmx:100795016 275.789