Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2701 atggCCACAGACGCAAGGGCGAAGTTCCAGAACCCGGATTTCCACCCCGATTTCCACGCGGACCTAACGGTGTCGGCTCACGACGGCCTCCACTTCTGGCAGTTCATGATCGCCGGATCCATCGCGGGGTGTGTCGAACACATGGCGATGTTCCCCGTTGACACCGTTAAGACCCACATGCAAGCCCTCGGTTCGTGCCCCGTCAAATCCGTAACGGTCCGTCAGGCCTTCCGGTCCATTCTCCAATCGGAGGGCCCGTCCGCCCTCTACCGCGGCATCGGCGCCATGGGCCTCGGCGCCGGGCCCGCCCACGCCGTTTACTTCTCCGTCTACGAGACCTGCAAGCGGCGGTTCTCCGAGGGGAGCCCGGGCAGCCCCGCCGCGCACGCCGCCTCCGGCGTCTGCGCCACCGTGGCCAGCGACGCGGTGTTCACGCCGATGGACATGGTGAAGCAGAGGCTGCAGCTGGGGAACAGCGGGTACAAGGGGGTTTGGGACTGCGTGGGGAGGGTGATGAACGAGGAGGGGGCGAGGGCGTTCTACGCCTCGTATAGGACCACCGTGTTGATGAACGCGCCGTTCACCGCCGTGCATTTCGCGACCTATGAGGCCGCCAAACGCGGCCTCATGGAGGTCTCGCCGGAGAGCGTTGATGATGAGCGATTGGTTGTGCACGCCACCGCCGGGGCTGTGGCGGGGGCTTTGGCTGCTGCGGTTACGACGCCGCTTGATGTTGCCAAAACTCAATTGCAGTGTCAGGGTGTCTGCGGCTGTGACAGATTCAAAAGCGGTTCAATTAGGGATGTTATTAAAACAATAGTGAAAAAGATGGATACAGAGGGCTCATGCGAGGATGGATTCCAAGGATGCTCTTTCATGCTCCTGCAGCTGCTATTTGCTGGTCTACATATGAAGCTGGAAAGTCCTTTTTCCAAGATTTCAATCAGCAGAGAGACATTGGTAAATAGCAGAGTTAGAATATTCATCATTCTTCGGTTCCATTATAGATGA 1011 0.5875 MATDARAKFQNPDFHPDFHADLTVSAHDGLHFWQFMIAGSIAGCVEHMAMFPVDTVKTHMQALGSCPVKSVTVRQAFRSILQSEGPSALYRGIGAMGLGAGPAHAVYFSVYETCKRRFSEGSPGSPAAHAASGVCATVASDAVFTPMDMVKQRLQLGNSGYKGVWDCVGRVMNEEGARAFYASYRTTVLMNAPFTAVHFATYEAAKRGLMEVSPESVDDERLVVHATAGAVAGALAAAVTTPLDVAKTQLQCQGVCGCDRFKSGSIRDVIKTIVKKMDTEGSCEDGFQGCSFMLLQLLFAGLHMKLESPFSKISISRETLVNSRVRIFIILRFHYR 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2701 336 PRINTS Mitochondrial carrier protein signature 48 62 IPR002067 GO:0055085
Ssu6g2701 336 PRINTS Mitochondrial carrier protein signature 181 199 IPR002067 GO:0055085
Ssu6g2701 336 PRINTS Mitochondrial carrier protein signature 35 48 IPR002067 GO:0055085
Ssu6g2701 336 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085
Ssu6g2701 336 PRINTS Mitochondrial carrier protein signature 139 157 IPR002067 GO:0055085
Ssu6g2701 336 Gene3D Mitochondrial carrier domain 14 210 IPR023395 -
Ssu6g2701 336 Pfam Mitochondrial carrier protein 125 211 IPR018108 -
Ssu6g2701 336 Pfam Mitochondrial carrier protein 221 277 IPR018108 -
Ssu6g2701 336 Pfam Mitochondrial carrier protein 30 120 IPR018108 -
Ssu6g2701 336 SUPERFAMILY Mitochondrial carrier 28 276 IPR023395 -
Ssu6g2701 336 PANTHER MITOFERRIN-1-RELATED 1 279 - -
Ssu6g2701 336 PANTHER MITOCHONDRIAL CARRIER PROTEIN, EXPRESSED 1 279 - -
Ssu6g2701 336 ProSiteProfiles Solute carrier (Solcar) repeat profile. 30 117 IPR018108 -
Ssu6g2701 336 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 313 IPR018108 -
Ssu6g2701 336 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 208 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2701 Ssu-Chr6 62709778 62712983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2701 1 289 Chloroplast and Mitochondria Gene Families AT1G07030 70.370 7.07e-138 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2701 K15113 - gmx:100802640 491.886