Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2692 ATGGGGGGTAATAATTCCTCACCTTGTGCTTCGTGCAAGCTGTTGAGACGCCGTTGCTCCCAGGATTGCATCTTTGCTCCTTATTTTCCTTCCAATGATCTCCGCAAGTTTGTCATTGTGCACAAGGTCTTTGGCTGCAGCAATATCAGCAAAATGCTAAAGGATCTTCCAGTTCACCAAAGAGCAGATGCAGTGAGCAGTTTAGTTTATGAAGCAAATGCAAGAGTTAGGAATCCTGTATATGGTTGTGTTGGAATCATATCTTATCTAGAAAGTCAAGTTTCTGAGTTGCAAACACAGCTTGCAGTAGCACAGGCAGAGATTCGTAGCTTGCGAATGTAG 342 0.4357 MGGNNSSPCASCKLLRRRCSQDCIFAPYFPSNDLRKFVIVHKVFGCSNISKMLKDLPVHQRADAVSSLVYEANARVRNPVYGCVGIISYLESQVSELQTQLAVAQAEIRSLRM 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2692 113 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Ssu6g2692 113 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 113 - -
Ssu6g2692 113 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Ssu6g2692 113 Coils Coil 87 113 - -
Ssu6g2692 113 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 6 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2692 Ssu-Chr6 62573346 62573850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2692 1 113 AS2 family AT2G30130 77.876 1.21e-63 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu6g2692 LOB 4.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2692 - - soe:110795140 188.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1251 9 45999348 46000716 Ssu6g2692 6 62573346 62573850 PCT