Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2689 ATGGAGAAGGTGGTATGTGTGACCGGCGGCAGCGGATGCATTGGTTCATGGGTCGTCCATCTCCTTCTGGATCGCGGCTACACCGTTCACGCCACCGTCCAAAATCTCAACGATGAAGCCGAGACGAAGCATCTAGAAGCCCTGGACGGAGCCTCCGCCCGCCTCCACCTCTTCCAGATGGATCTCCTCCGCTACGACTCCGTCCTCTCCGCCGTCCGCGGCTGCGCCGGCGTGTTCCACCTTGCCTCTCCCTGCATTGTGGACCAAGTCCACGACCCCCAGAAGGAACTTCTGGACCCGGCGATCAAGGGAACCATGAACGTGCTCGCGGCGGCGAAGGAAGCAGGGGTGCGGCGCGTGGTGGTCACGTCTTCCGTCTCCGCGATTACGCCGAGCCCCAAGTGGCCCGGTGATGTTGCCAAGACAGAGGAGTGCTGGACCGATATTGAATATTGCAAGCAAAAGGGGGTTAGCGagggttttcaattttttttttcattttctttgttttttgttttttgtgttttgtggGTGTGCATTAAGtctttgtgtttgtgtgtggaACAGTTGTGGTATCCGTTGTCTAAGACTTTGGCTGAGAAAGCGGCTTGGGATTTTGCCAAGGAGAATAGTTTGGATGTTGTGGTGGTGAATCCTGGGACTGTGATGGGTCCTGTTATTCCACCGAGGCTTAATGCTAGCATGGTCATGTTGGTGCGCCTTCTACAAGGCTGTGTTGAAACATATGAGGACTTTTTTATGGGATTGGTCCATTTTAAGGATGTAGCATTGGCACATATTTTGGTGTATGAGAACAAATCAGCAGCTGGTAGGCATTTGTGTGTTGAAGCTATCTCTCACTATGGTGACTTTGTGGCAAAAGTTGCTGAACTTTATCCAGAGTATAATGTGCCTAGGATGCAACGAGATACCCAACCGGGATTATTGAGAGCCAAGGATGGATCAAAGAAACTTATGGATTTGGGTTTGCAATTCATtccaatggagaagattattaAGGATGCTGTAGAGGATTTGAAGAGCAAAGGGTTCCTTTCTTAA 1062 0.4736 MEKVVCVTGGSGCIGSWVVHLLLDRGYTVHATVQNLNDEAETKHLEALDGASARLHLFQMDLLRYDSVLSAVRGCAGVFHLASPCIVDQVHDPQKELLDPAIKGTMNVLAAAKEAGVRRVVVTSSVSAITPSPKWPGDVAKTEECWTDIEYCKQKGVSEGFQFFFSFSLFFVFCVLWVCIKSLCLCVEQLWYPLSKTLAEKAAWDFAKENSLDVVVVNPGTVMGPVIPPRLNASMVMLVRLLQGCVETYEDFFMGLVHFKDVALAHILVYENKSAAGRHLCVEAISHYGDFVAKVAELYPEYNVPRMQRDTQPGLLRAKDGSKKLMDLGLQFIPMEKIIKDAVEDLKSKGFLS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2689 353 Gene3D - 1 353 - -
Ssu6g2689 353 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 182 344 - -
Ssu6g2689 353 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 346 IPR036291 -
Ssu6g2689 353 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 3 157 - -
Ssu6g2689 353 CDD FR_SDR_e 5 330 - -
Ssu6g2689 353 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 182 344 - -
Ssu6g2689 353 Pfam NAD dependent epimerase/dehydratase family 5 136 IPR001509 -
Ssu6g2689 353 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 3 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2689 Ssu-Chr6 62519757 62522945 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2689 3 353 Monolignol Biosynthesis Gene Families AT5G58490 70.085 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2689 - - gmx:100803241 592.423