Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2683 ATGGCCGCAGCCTTGGAGTGCTGGTCCACCCGCACCAGCACCCCCGCCGACGACGACATGGTGGAGCAAGTCCTCATGCGCACCCACCACAGATCCGAAGGCGCCGCCGCACCCTCCCCCAGAGACCCCTCCTCCCTCCCCGTCCACAAGAAGCTCCAGAAGCTCACCCGCAACGTCTCCGAGGCCATCGCCTCCTTCAGAAACTCCCTCAACCTCGACTCCCCTCCCTCCTCCAAAGCCGCCGACGCCTCCTCCCGGAAACTCGCCTGGGGCGCCGTCGTCCGCAACCTCACCCAGCTCTACCCCGGCAGCCAGCTCCCCGAGAAGCTCATGTCCAACATTCGCAAGCATTACGATTCCTTGCCCCTCAGTTATGCACAGGCTGAGTTTGATATGAAGGATGTGTTTCTTCACATAAAGTTGATGGAGCAAGCTTCGGAGAGTGACCAGCCTGCGATTTTGATTCAGGAGGAGTGTGATGACGAGGTTCAGGGTTCTGCGTTGAGGCTCACGTTTGCTTGCAACTCTCCGATTTCGTGGCCTGCGATGTCGGGTGCGTTGGATAGTTCCTCCATTTGCTGCAAGAGGATGCAGATCTTTGAGAAGAAGGGTTTCACCTTGGGGGTTGTGCTTCTTGTGGTTCAGTCTGGGCATGACAAGTTGGTGAGGACCAGGGTTGAAAATGCTTTGAAGTTTGCCATGAAGAGGTCCAAAACTGGTTCTGTGAAGCTTCCCTTTGGGCTCTGTGGGTGCCAGGAGGAGAATTCCAAGGGGAGAGAGCTTGTGGAGATCGAAGAAGACGCCGGTGATGGTTACCGCGGGAAGGAGTTTGAGAATTCAAGCCAAAGGATTCAGCTTCAGGTGCCTTTGCCTTCTTCATCTTTTGTTGTGTCGGTGGATGAATGGCAGACCATAAAGTCAGGTGGGGGTGAGATTGAGAAATGGTTGTTGAACTCGGACAGTGTTGAGTTTGTGGAGCAGATTGGGCCGAATTCGTATAAGGGGGTGTATATGGGGAAGAGGGTTGGGATTGAGAAGTTGAAGGGGTGTGATAAAGGGAATTCTTATGAGTTTGAGCTCCACAAGGATCTGCTGGAACTCATGACTTGTGGTCATAGGAACATTCTGCAGTTCTGTGGTATTTGTGTGGATGATAATCATGGGTTGTGTGTGGTGACCAAGTTCATGGAAGGTGGCTCTGTTCATGACTTGATGTTGAAGAACAAGAAGCTTCAGACTAAGGATGTTGTGAGGATTGCTGTTGATGTGGCTGAAGGGATCAAGTTTATGAACGACCATGGTGTTGCATACAGGGACCTTAATACGCAGAGGATTCTGCTGGATAGGCATGGGAATGCTTGCTTGGGAGATATGGGTATAGTCACTGCCTGCAAAAGTGTTGGAGAAGCAATGGAGTATGAAACTGATGGTTATAGGTGGCTAGCTCCTGAGATAATTGCAGGGGACCCAGAGAATGTGACAGAGACATGGATGAGTAACGTTTATAGTTTTGGGATGGTAATTTGGGAGATGGTAACTGGTGAGGCAGCATATTCCTCATTTTCACCTGTGCAAGCGGCGGTGGGAATTGCTGCATGTGGCCTTAGACCTGAAATCCCAAAAGACTGCCAACAAACTCTAAAATGCATTATGACAAAGTGCTGGAACAACACCCCTTCCAAACGCCCTCAGTTCTCTGAAATTTTAGCCATATTGCTGCGACCAAACAACAAACAATAG 1740 0.5103 MAAALECWSTRTSTPADDDMVEQVLMRTHHRSEGAAAPSPRDPSSLPVHKKLQKLTRNVSEAIASFRNSLNLDSPPSSKAADASSRKLAWGAVVRNLTQLYPGSQLPEKLMSNIRKHYDSLPLSYAQAEFDMKDVFLHIKLMEQASESDQPAILIQEECDDEVQGSALRLTFACNSPISWPAMSGALDSSSICCKRMQIFEKKGFTLGVVLLVVQSGHDKLVRTRVENALKFAMKRSKTGSVKLPFGLCGCQEENSKGRELVEIEEDAGDGYRGKEFENSSQRIQLQVPLPSSSFVVSVDEWQTIKSGGGEIEKWLLNSDSVEFVEQIGPNSYKGVYMGKRVGIEKLKGCDKGNSYEFELHKDLLELMTCGHRNILQFCGICVDDNHGLCVVTKFMEGGSVHDLMLKNKKLQTKDVVRIAVDVAEGIKFMNDHGVAYRDLNTQRILLDRHGNACLGDMGIVTACKSVGEAMEYETDGYRWLAPEIIAGDPENVTETWMSNVYSFGMVIWEMVTGEAAYSSFSPVQAAVGIAACGLRPEIPKDCQQTLKCIMTKCWNNTPSKRPQFSEILAILLRPNNKQ 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2683 579 MobiDBLite consensus disorder prediction 29 48 - -
Ssu6g2683 579 PRINTS Tyrosine kinase catalytic domain signature 543 565 IPR001245 GO:0004672|GO:0006468
Ssu6g2683 579 PRINTS Tyrosine kinase catalytic domain signature 499 521 IPR001245 GO:0004672|GO:0006468
Ssu6g2683 579 PRINTS Tyrosine kinase catalytic domain signature 429 447 IPR001245 GO:0004672|GO:0006468
Ssu6g2683 579 PRINTS Tyrosine kinase catalytic domain signature 393 406 IPR001245 GO:0004672|GO:0006468
Ssu6g2683 579 SUPERFAMILY Protein kinase-like (PK-like) 308 572 IPR011009 -
Ssu6g2683 579 ProSiteProfiles Protein kinase domain profile. 322 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2683 579 PANTHER SERINE-THREONINE PROTEIN KINASE 1 576 - -
Ssu6g2683 579 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 576 - -
Ssu6g2683 579 Gene3D Transferase(Phosphotransferase) domain 1 315 576 - -
Ssu6g2683 579 Pfam Protein tyrosine and serine/threonine kinase 357 571 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2683 Ssu-Chr6 62347605 62351999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2683 313 572 MAP Kinase Kinase Kinase AT2G17700 34.082 4.63e-52 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-7 Ssu6g2683 PK_Tyr_Ser-Thr 5.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2683 - - pvu:PHAVU_008G258400g 1087.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2683 6 62347605 62351999 Ssu6g2683 6 62347605 62351999 ECH
Ssu9g1243 9 45823023 45827396 Ssu6g2683 6 62347605 62351999 PCT