Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2680 ATGGCACAAGCGTGGACACCGTTCACTCCGTTGAAGTTGTCGCTGGCGGTGCTGACTCTGTTTTTTGCGTTGCGCCAGAAACAGAGTCTCTGTTCGACGCTGAAGAGCGAAGGTTTGGCGCTGCTAGCGTTGAGGGAGAGGGTGGCGAGAGACCCGCTGGGGGCTTTATCAAGCTGGAATGGCGAAGATGGAGACGTTGATCCATGCTCGTGGTTCGGTGTGGAGTGCTCTCACGGTAACGTTGTGGCCTTGAATTTAGAAGACCTTTGTCTCGAAGGAACACTAGCACCAGAAATTGGAAAGCTGGCTCACATAAAATCAATCATTTTGCGCAACAATTCTTTCTTTGGAGAAATTCCCAAGGAGATACTACACTTAGAGGAGTTGGAAGTCCTTGACTTGGGATATAATAACTTTAGTGGATCACTTCCATTTGACCATGGCAATATGCCATTGCCATCTCTGACCACTCTTTTATTGGACAACAATTACTATCTAACCAACTTAACTCCAGAGCTGTATAAGCTCAAGATGATTTCTGAATTTCATGCTAATGAAGAACAACCAACTAGTGCCACCACTAGAGAAACAATTGTTGGCAGATGTAGTTTATTATGGCACATTGGCCAACATGGGGATAGAGCATACAGGAGGCAACTTCTCAAGGTAGCAAATGCTGCTAATGCACGCAGAATCCAAGGGGATGTTAACCAAGGGACGCTTAAACAATCAGCATCacattttccttcttcattaTCACCAGATTTTGAGCCTTTctcatcatcaccatcaccatttTCACCATTGGAAAGTCCTTCATATTCACCAGGATCAGCTTCATTGTCATATTCACCATTGCCATCTCCCTCAAGCATTTTTTTCACTCCTTCACCCTCTCCTTCACCTGTAGTGCTACCAACTCCAGATATATCACCCCCAGCAAACGCACCTACCACTGTGTCTACACCACCAGAGATTAATTGGATTTCAGCACCTAGCCCTTCTCCATTTTCTAACCAAGGGAGTACAAACAGTTCCAATCCACTGCATCATTCAGCGATAATCTGGTCTGCAGTTGGGGGCTTCACCTTATTGATTTTGGTGTCAGCCATTACTTTTGCTTGCTTCCAAAGTAGGAAGGTTGTGTCTGTTAATCCTTGGTCCACAGGGTTGAGTGGCCAGCTGCAGAAAGCTTTTGTAAAAGGTGTTCCAAATCTCAAACGAGCAGAACTTGAAGCAGCTTGTGAATATTTCAGCAACATCATTGGTTCTCTGCCTGATGGAACTGTGTATAAGGGGACTCTCTCCAGTGGAGTTGAGATAGCTGTAGCATCCTCTGCAGTGACCACAGCTCAAAACTGGTCACAAAGTATGGAAGCTCAATTCCGAAAGAAGATAGCGACATTATCTAGAGTGAACCACAAAAATTTTGTGAATCTTATTGGGTATTGTGAAGAGAATAAGCCATTCTCAAGAATGATGGTGTTTGAGTACGCTCCAAATGGCACACTCTTTGAGCATCTACACATTAGAGAAGCAGAAGAATTAAATTGGACAATGAGAATGAGGATAGCTATGGGAATTGCCTACTGCCTAGAGCATATGCATGAGCTGAAACCACCCATTGCCCATAGAAACCTGCAATCTTCCTTTATATACCTCACTGAAGATTATGCTGCAAAAATATCAGATATTAGTTTTTGGAATGAAATATTTGCTACAAAGAATGGATCTGCAACCACACAACTCTTGGAAACACCATCAGTAGATACCAAGGACAATGTTCACAGCTTTGGAATAATATTGTTTGAGTTGATTACAGGGAGAATTCCCCATGCTGGGGACAATGATCTTCTGACAGATTGGGCAGCAGAATATGTAAGGTGGGGGAAATCCTTAAGAGATGTTGTGGATCCAAGACTGAATTCTTTGCAAGAGGAGATAGAGGAATGGTCTGAAGTGATAAGAAATTGTGTACGTCCAGATCCAGAGAAAAGGCCAACTATGAAAGAAGTTACAGCTAGACTCAAGGAAATCACAGCTATGGGGCCTGATGGAGCAAATCCAAAAGCATCACCACTTTGGTGGGCAGAAATGGCAATTACGTCCACCGATTCAAGTTGa 2124 0.4289 MAQAWTPFTPLKLSLAVLTLFFALRQKQSLCSTLKSEGLALLALRERVARDPLGALSSWNGEDGDVDPCSWFGVECSHGNVVALNLEDLCLEGTLAPEIGKLAHIKSIILRNNSFFGEIPKEILHLEELEVLDLGYNNFSGSLPFDHGNMPLPSLTTLLLDNNYYLTNLTPELYKLKMISEFHANEEQPTSATTRETIVGRCSLLWHIGQHGDRAYRRQLLKVANAANARRIQGDVNQGTLKQSASHFPSSLSPDFEPFSSSPSPFSPLESPSYSPGSASLSYSPLPSPSSIFFTPSPSPSPVVLPTPDISPPANAPTTVSTPPEINWISAPSPSPFSNQGSTNSSNPLHHSAIIWSAVGGFTLLILVSAITFACFQSRKVVSVNPWSTGLSGQLQKAFVKGVPNLKRAELEAACEYFSNIIGSLPDGTVYKGTLSSGVEIAVASSAVTTAQNWSQSMEAQFRKKIATLSRVNHKNFVNLIGYCEENKPFSRMMVFEYAPNGTLFEHLHIREAEELNWTMRMRIAMGIAYCLEHMHELKPPIAHRNLQSSFIYLTEDYAAKISDISFWNEIFATKNGSATTQLLETPSVDTKDNVHSFGIILFELITGRIPHAGDNDLLTDWAAEYVRWGKSLRDVVDPRLNSLQEEIEEWSEVIRNCVRPDPEKRPTMKEVTARLKEITAMGPDGANPKASPLWWAEMAITSTDSS 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2680 707 SUPERFAMILY L domain-like 35 186 - -
Ssu6g2680 707 Pfam Leucine rich repeat N-terminal domain 35 77 IPR013210 -
Ssu6g2680 707 Gene3D Ribonuclease Inhibitor 33 227 IPR032675 -
Ssu6g2680 707 Pfam Protein tyrosine and serine/threonine kinase 421 676 IPR001245 GO:0004672|GO:0006468
Ssu6g2680 707 ProSiteProfiles Protein kinase domain profile. 416 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2680 707 MobiDBLite consensus disorder prediction 304 344 - -
Ssu6g2680 707 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 8 706 - -
Ssu6g2680 707 SUPERFAMILY Protein kinase-like (PK-like) 409 676 IPR011009 -
Ssu6g2680 707 MobiDBLite consensus disorder prediction 304 319 - -
Ssu6g2680 707 MobiDBLite consensus disorder prediction 320 344 - -
Ssu6g2680 707 MobiDBLite consensus disorder prediction 240 271 - -
Ssu6g2680 707 PANTHER PROTEIN MALE DISCOVERER 2 8 706 - -
Ssu6g2680 707 Gene3D Phosphorylase Kinase; domain 1 392 498 - -
Ssu6g2680 707 Gene3D Transferase(Phosphotransferase) domain 1 499 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2680 Ssu-Chr6 62258294 62265569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2680 16 679 Receptor kinase-like Gene Family AT1G25320 24.966 2.25e-43 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Ssu6g2680 PK_Tyr_Ser-Thr 6.8e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2680 - - gmx:100779427 1084.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2680 6 62258294 62265569 Ssu6g2680 6 62258294 62265569 ECH
Ssu6g2680 6 62258294 62265569 Ssu9g1237 9 45703494 45708951 ECH
Ssu9g1237 9 45703494 45708951 Ssu6g2680 6 62258294 62265569 PCT