Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2671 ATGGCCAACAAACAAACCATTTTTTGCATCCTCGTCCTCACCATCGTTGTCGGCGCGCTTATTAGTATTGCGGTCTATTCGTTGATCCAAGCGTTGTCGCCGCTCAAGTACTCTGTGATGGATGCTAACCTCATCCAATTCAATTACAGTAACAAAACCTTTTACTATAACCTCGCCCTCAACATGACAGTCTCCGAAGCTATCTATTACGAATACATAATTGCAAACGTGTTGTACCAAAATGTCACGTTTGGTTCTCAAACTGTGGAATTAATGTTCAAGAAGGGCTTCAGCAAGTGGAACATGGACCTCAAAGGTCAGCATGTGATGGCCCTCAACACCAATCAAATTTCAGAGTTTAATAAGGAGAAGATATCTGGGGTTTACCACATCAATGTGAAGTTGTGCCTCAGGTCTAGGCTAAACTATGACCCGCGCAGGCCTTTGGTTCGTTGTGACTTGCTGGTTCctctcaaatcaaacaaagaAATCCCACAGGCCCATGGTTTTCATGCAACTCGATGTCATTTAGGTTATGCTCATGATGACAATTGTTCCTAG 561 0.4225 MANKQTIFCILVLTIVVGALISIAVYSLIQALSPLKYSVMDANLIQFNYSNKTFYYNLALNMTVSEAIYYEYIIANVLYQNVTFGSQTVELMFKKGFSKWNMDLKGQHVMALNTNQISEFNKEKISGVYHINVKLCLRSRLNYDPRRPLVRCDLLVPLKSNKEIPQAHGFHATRCHLGYAHDDNCS 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2671 186 PANTHER OS05G0367900 PROTEIN 7 177 IPR044839 GO:0098542
Ssu6g2671 186 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN 7 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2671 Ssu-Chr6 62089213 62089773 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2671 35 158 SNARE and Associated Proteins AT1G32270 33.813 3.59e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2671 - - ming:122058374 107.842