Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2670 atgCTCGTAGCCATACTTTCCTTGCTCCTAGTAATCCTCTTCGTCCTCCTGCTCCACGTGTACGCCAAGTGGTTCTTATCTCAGGCGCAACCACGTTCCCGGACTCGCCGGCGGCGAACTCAGGTGACCGTCTCCGGCGTTCTGGAACCTTCCGATTTCTACAGCATCAATTTGGAGGCCTCACCCGCGTGCACCAAGGGCCTCGACTCGGCCATAGTTTCGGCGATTCCCATGTTTGTGCACGGAACAGAGAAAACAGAGGAATTGGGATGTGTGATTTGTTTGAGCGTTATTGAGGAGGGTGAGATTGGAAGGAGCTTGCCGAAGTGTGGCCACGCTTTTCACGTGGAGTGCATTGACATGTGGCTGAGTTCGCACTGCAATTGTCCCATTTGTAGAGCTCCTATTGTGGCGAGTGGGGTTGTTCAGAACGATTCTGAAATGGGTTCTGTTGATGGTGATGGTGTGTTTGAGATTGTGGTTGTTACTCCAGGTTATGAGATTAGTGAGAGTGAGCGTGACCGTGGGGATCATGGTGATTCTGTTCCAGAAACTTCATCTTTGTTGGGTTGCTCTTTGAAGAGATTGCTGAGTAAGGTTTTTCTGTCACCTGATGTAAGTGAATTCGATGATTCACAATGA 642 0.4969 MLVAILSLLLVILFVLLLHVYAKWFLSQAQPRSRTRRRRTQVTVSGVLEPSDFYSINLEASPACTKGLDSAIVSAIPMFVHGTEKTEELGCVICLSVIEEGEIGRSLPKCGHAFHVECIDMWLSSHCNCPICRAPIVASGVVQNDSEMGSVDGDGVFEIVVVTPGYEISESERDRGDHGDSVPETSSLLGCSLKRLLSKVFLSPDVSEFDDSQ 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2670 213 CDD RING-H2_EL5_like 91 133 - -
Ssu6g2670 213 SMART ring_2 91 132 IPR001841 -
Ssu6g2670 213 Pfam Ring finger domain 91 133 IPR001841 -
Ssu6g2670 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 140 IPR013083 -
Ssu6g2670 213 ProSiteProfiles Zinc finger RING-type profile. 91 133 IPR001841 -
Ssu6g2670 213 PANTHER - 1 206 - -
Ssu6g2670 213 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 206 IPR044675 -
Ssu6g2670 213 SUPERFAMILY RING/U-box 78 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2670 Ssu-Chr6 62075003 62075644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2670 1 159 Rapid Response to Elicitors AT3G16720 36.310 1.15e-25 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2670 - - gmx:102665763 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2670 6 62075003 62075644 Ssu6g2670 6 62075003 62075644 ECH
Ssu9g1228 9 45310835 45311572 Ssu6g2670 6 62075003 62075644 PCT