Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2665 atggcTTCTTCGTGGGTGAGAGGCAAGTGCGTCGGTAAGGGCGCGTTTGGCGTCGTGAATATTGCGGTTTCTAAAATAGATGGTGGCGTTTTCGCGGTGAAGTCCGTGGATCGCAAGACGGGGCTCCCGGGTCAGGTGGAAGCGTTGGAGAACGAGATTCGGGTTCTGAAACGCGTGGCTTCGCCGCACGTGGTGGCTTATCTCGGCGACGATGTCACGTGCGAGGATGGCGCAACGTCGTCGTTCCGGAACCTTCATTTGGAGTACATGCCAGGTGGCACCGTCGCTGATTTGGCTCCTGCTGACGTGGACGAGCGGTCCCTGAGGCGCTACGCGTGGTGCCTGGTGAGCGCGCTGCGCGACGTTCACGCGCGCGGCGTCGTGCACTGCGACGTGAAGGGGAGGAACGTGCTCCTCGCCGGCGACGGCTCCGTCGCGAAGCTCGCCGACTTCGGCGCGGCGGTGGAATTTGATTCCCCGGCGCCGTTGCCGCGGGGGAGCCCGATGTGGATGGCGCCGGAGGTGGTTCGCCGGGAGAGGCAGGGGCCGGAGTCCGACTTGTGGTCGCTCGGGTGCACGGTGGTGGAGATGGTCACCGGGAAGCCGGCGTGGGAGGATCGCGGCGTCGACACGCTGAGTCGAATCGCCTACTCGGACGAGTTGCCGGAGTTTCCGAGCGAGTTGTCGGAGCTAGGGCGCGATTTTCTCGAGAAGTGTCTGAGGAGGGAACCGAGTGAACGGTGGAGCTGCGATCAGCTGCTGCAGCATCCATTTTTGCTTCCCTACAACCGCGTTTTGGAATCGTCCCCTCGTTGCGTTCTTGACTGGGTTGACTCGGAGTTCGCCGAGTCAGATAACGACCGTGAAGAATCAGaggtgttattaaaatttaacagcGAAGAAAATTCAGTAAAAAATAGGATTAGTAAATTAGCGACAGTGTCGAGGGCAAATTGGGAAACACAGGGTTGGGTTGTGGTGAGGGAAATTGAGTCCAACGGAGAACCAACAACAACGGGAACAGAAGGGGTAAATTGGGAATTTTCAATGTGGCAGGGACTGGTTTGGAAAATTCGGATTCTGGAGGGGCAAATCGGGAAATGA 1104 0.5761 MASSWVRGKCVGKGAFGVVNIAVSKIDGGVFAVKSVDRKTGLPGQVEALENEIRVLKRVASPHVVAYLGDDVTCEDGATSSFRNLHLEYMPGGTVADLAPADVDERSLRRYAWCLVSALRDVHARGVVHCDVKGRNVLLAGDGSVAKLADFGAAVEFDSPAPLPRGSPMWMAPEVVRRERQGPESDLWSLGCTVVEMVTGKPAWEDRGVDTLSRIAYSDELPEFPSELSELGRDFLEKCLRREPSERWSCDQLLQHPFLLPYNRVLESSPRCVLDWVDSEFAESDNDREESEVLLKFNSEENSVKNRISKLATVSRANWETQGWVVVREIESNGEPTTTGTEGVNWEFSMWQGLVWKIRILEGQIGK 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2665 367 Gene3D Transferase(Phosphotransferase) domain 1 1 333 - -
Ssu6g2665 367 CDD STKc_MAPKKK 4 259 - -
Ssu6g2665 367 Pfam Protein kinase domain 7 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2665 367 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 345 - -
Ssu6g2665 367 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 3 345 - -
Ssu6g2665 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Ssu6g2665 367 SMART serkin_6 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2665 367 SUPERFAMILY Protein kinase-like (PK-like) 3 299 IPR011009 -
Ssu6g2665 367 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Ssu6g2665 367 ProSiteProfiles Protein kinase domain profile. 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2665 Ssu-Chr6 62018815 62019918 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2665 5 335 MAP Kinase Kinase Kinase AT2G30040 60.294 2.51e-132 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Ssu6g2665 Pkinase 8.2e-52 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2665 6 62018815 62019918 Ssu6g2665 6 62018815 62019918 ECH