Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2664 atgtcTTGCTCCGTCGCGGTTTCCAATTCGCCGGTGTTCTCTCCGTCGTCCTCGCTCTTCTGCACGAAGCCCTCCATCATCTCGTCGCCGGAGGCCCTTTCGCTCTCTCTGTCGCATCTCAAGCCCTCGAACTCTTCTACGGCGTCGTCTTGctcttcatcatcatcttcttcttcttctccttccgctgctgcttcttcctctccttcctCTCCCTTCCGGCTTCGCCTTCCCAAGCCTCCCACCGCGTTCTCTGCCTCGTCTTCCTCCACCTCCCCAAACGCCACCGTTTTGAAGAGGAAGCGACCCGCCAGGTTGGACATACCCGTTTCTTCTCTCGCCTTCGGGGTTCCGCCCACGCCCTCCGCGGCGGCGCGTGACGTAGTCGAGGCTGAGGGAGATGGGTTCTCCGTGTACTGCAAGAGGGGAAGGAGGGAGTACATGGAGGATCGTTACTCTGCCGGGGATAATCTTCGCGGAGAACACAAACTGGCTTTTTTTGGCATATTTGATGGGCACGGAGGTGCTAAAGCTGCTGAATTTGCTgcaaataatttagaaaagcatGTCTTAGATGAAGTGATCGTgagagatgatgatgatgttgaggagGCAGTGAAGCGTGGGTACCTAAATACGGATTCGGATTTCCTAAAAGAGGATCTTCATGGTGGCTCTTGCTGTGTGACAGCAATGATTAGGAATGGTAACCTTGTTGTGTCCAACGCCGGCGATTGCCGTGCAGTCATTAGCAGAGGGGGTGTTGCTGAGGCCCTAACATCGGATCACCGGCCTTCAAGGGAAGATGAAAGGGACAGAATTGAGAGCCTGGGTGGCTATGTCGATTTATGCCGTGGTGTTTGGAGGATCCAAGGATCTCTGGCTGTGTCTAGGGGAATTGGAGATCGACACCTGAAACAATGGGTGACAGCAGAACCTGAGACCAAAGTTCTCAGAATTGAACCTGAACATGACTTGTTAATCTTAGCTTCAGATGGATTATGGGAAAAGGTTAGTAATCAGGAAGCAGTAGATATTGCTCGTTCTTTTTTCGTTGGGAACAACAAAGCACAACCATTGCTGGCCTGTAAAAAGCTTGTAGATTTGTCTGTTTCAAGAGGCTCTATGGATGATACAAGTGTTATGCTAATCAAATTGGAGCACTATATTTAA 1173 0.4663 MSCSVAVSNSPVFSPSSSLFCTKPSIISSPEALSLSLSHLKPSNSSTASSCSSSSSSSSSPSAAASSSPSSPFRLRLPKPPTAFSASSSSTSPNATVLKRKRPARLDIPVSSLAFGVPPTPSAAARDVVEAEGDGFSVYCKRGRREYMEDRYSAGDNLRGEHKLAFFGIFDGHGGAKAAEFAANNLEKHVLDEVIVRDDDDVEEAVKRGYLNTDSDFLKEDLHGGSCCVTAMIRNGNLVVSNAGDCRAVISRGGVAEALTSDHRPSREDERDRIESLGGYVDLCRGVWRIQGSLAVSRGIGDRHLKQWVTAEPETKVLRIEPEHDLLILASDGLWEKVSNQEAVDIARSFFVGNNKAQPLLACKKLVDLSVSRGSMDDTSVMLIKLEHYI 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2664 390 CDD PP2Cc 135 386 IPR001932 -
Ssu6g2664 390 MobiDBLite consensus disorder prediction 38 101 - -
Ssu6g2664 390 MobiDBLite consensus disorder prediction 82 97 - -
Ssu6g2664 390 ProSitePatterns PPM-type phosphatase domain signature. 166 174 IPR000222 GO:0043169
Ssu6g2664 390 SMART PP2C_4 128 384 IPR001932 -
Ssu6g2664 390 SUPERFAMILY PP2C-like 136 387 IPR036457 -
Ssu6g2664 390 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 389 - -
Ssu6g2664 390 Pfam Protein phosphatase 2C 136 378 IPR001932 -
Ssu6g2664 390 PANTHER PROTEIN PHOSPHATASE 2C 3 389 IPR015655 GO:0004722|GO:0006470
Ssu6g2664 390 ProSiteProfiles PPM-type phosphatase domain profile. 135 386 IPR001932 -
Ssu6g2664 390 MobiDBLite consensus disorder prediction 38 73 - -
Ssu6g2664 390 Gene3D - 135 389 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2664 Ssu-Chr6 62005088 62007010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2664 1 390 PP2C-type Phosphatase Gene Family AT2G30020 63.480 2.20e-167 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2664 K17506 - gmx:100797934 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2664 6 62005088 62007010 Ssu6g2664 6 62005088 62007010 ECH
Ssu6g2664 6 62005088 62007010 Ssu9g1223 9 45216481 45218115 ECH
Ssu9g1223 9 45216481 45218115 Ssu6g2664 6 62005088 62007010 PCT