Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2659 ATGGGGACAGGACCACGCTCTCAAAACAGTGCCCGCGTGCCACGTGGGACAACATGCATGGTGTGCCAGCGTGGACCAATGAGAACGAAGGCCACACAGGGAACAGGGAACAGGGGATTCTCATTCGGCGTTGCCAGTTTTATTATGTGTTTGGTGTGTGCGGCATTCTCATTTGTCATGTCTCTGAATCAGTCTCCAATGGATGTTGATGGTGTCAAGTGTTATGGGAACAGAAAGCATAGAAGAGGGTCGAGGAAAAGAAAGCTTCTTGTCAATGAGAGAGTCGAGGTGAAGAGTGTGGAAGAGGGTTTTCTGGGTTCATGGCACGCGGGGACAGTGATCCGTTGCGAGAGGCAGAAGCGTCATGTCAAATATGACAACATTCTAGATGATGATGGAAAAAAATATCTTGTGGATGTGGTGTATGTTTCAGCTGTTTTGGATGGTGTTGATTCTTCTTCAGATTGTAGCAATGAACGTGGATTCATTAGACCACTGCCTCCTCAGCTTGAGTTTGGGGAGAGGGACCTTTCATTTGGTCGCTGTGTTGATGTGAATTATCTAGAAGCCTGGTGGGAAGGTGTTATATTTGATCAATGCAATGGAATGGAGGAGAGGAGTGTGTTCTTCCCGGATTTGGGTGATGAAATGAAGGTTGGAACTCGTCAATTGCGGATAACTCAGGATTGGGATGAAGCTACTGAGAATTGGGAGCCGCGAGGGAAGTGGGTGTTCCTTGAATTGATTGAGGAGTGTGAGAGGGAATCCTTTGTTGCAGTTTCAGTGAAGCAAATATGGTATGATGTAAGGGCGAGAAAGGATTTTGACAATATAAAGCACTGGACTTGTAATGAGAAGGATATGTGGAGAGACCTTGTAGTGGATGTCGTTGGTGACTACTATACTCTCACACTACAAGAAGTTTTCCCGGCCTTAAACCTTCCGGAGGATTTCTTGAAAGAAGCACCAGAACTGAAGTCAGTTGAAGCTACTGGCAACATTCATTGTGATGCCAGTCATAGTAATATATTTGGTTCTGACATTAGACATCATACCCTTCAAGAGGAAGATGATAAAGATCCTTTGGTGGACGGGGCATCTGAGAAGGAAATTCTTTTGGGGGAAGAACCTGTATCTCCAGTTCAAGAGATCTTGCCTGATGCTGGAGAAGTAATTCCAGGTGCCAGCTGGggtgaaaagaagagaaaacgtAGATGCTCAACGTCCATATGTTGGCAACCTATGATACTGACTGAGGTTGAATTCTGTCCTGATGTTGTTAACAAATATTTACTTGGATGTGGGAGCAAGACCATTAGGGAACTTTTGAAGGCAAAAGTATGGAAACATCTTGCATATCTTGGATGGACAATTGAGTGGACTGAAGATAAATATTTTCCTGGGCGAGGACGGTACAGGTACAAGTCACCTGATGCACCGGACCAGAAGGTTTACACTTCAATTATTCAAGTTTTGACACATATGCAAATGGAGCCCAACATGAACTCTGTGCAACCTCAAATTGATCACAATAGGATGCATTCTACAAATGACACTAGTCTTTCACATCTGCTTTCAGATCTCCCCCAAAATGACCAGGATCTAGACGTTTGTCCTCCAAATGTGGAACCTTCTCAGGTCAAAGTTGTATTTGAACCAGAATTTTGTCCTCAAGCTGTTGTGAAATATTACTTGAATGCATCAGAGAAACATTGGGTTGATAAAGGAAAATGGAAACTGAAAGCAAAGAAGCATTTGTTAGCAGAAGGGTGGAGCTTTGACTACCCAACTAAGAAAAGAAGGACAACTTTGTACAAGTCTCCACGAAATCAGTGTTTGGGAACACTTCAAGGTGCATGCAGACTATACATTAAAGAAAAGATTCCTGAATGGACTAATTCAGGCATGATACCTTTGAATGTCCCAGCCATGAATGAGGGAAGTGTTGGTCATGTTGATAGTGATGATCTATTGCAAAGTTTGTCCCAAGTGCTTCAAAAAGAGCCTGAATTGCATACTGCTTCACCAGTAAGTAGATCAACTGAGAATAGAAACCATAAACGCACCAGGAATTCAAAGGCCACCATGCCAAAGCGCCACAGGAAAGGATCACCTAAACGGGTGCTAAGATCAAGCAAACGGGTGCAGAAGGTATCTGCCCCTAGTCTGTCACACCAAAGACCTCAAAATGTTCTGTCTTGGTTAATAGATAACAATGTGCTGACGCCAAGATTTAAGAAAATATATGGTCTTGGTGGCTTTGTAAATCATGCTGGTGGCAGTAGTGACTGCAGGCCTTCTGCTAGTATCTTTTTGAAGGATGGTAGGTCACTCTTAGAGTGCATGATAAAAGTAATGCATGATCAAAGAACAAGGGAAGATATGATGAGACCATGCAATGATCTGTGTGAAGGCGAAAATGACAACATTTGTTCTGTCTGTCAATATGGTGGTGAACTTATTTTATGTGATCAATGTCCATCTGCATTTCATAGGACGTGTCTTGGTTTGGAGGATATCCCTGATGGTGACTGGTTTTGTCCATCATGTCGTTGCGGGATTTGTGGCCAAATCAAAATAGAAGGGACTGAGGATGTACTTTTTCTTACTTGCATTCAATGTGAACATAAATATCATGTTGGATGcctgaaaaatagagaaaaagatgagTCCAGAAGATATATGGAAAATTGGTTGTGTGGAAAAGAGTGTGAACAGATATATGCTGGCCTCCAAAGTCTATTAGGAAAGCCAGTTACAGTGGGTGTGAACAATCTAACTTGGACATTGGTGAAGTTTATCAACTCTGAGATTTCTGATGTTGGTAATACTAAGAATGACTTATTGGCTGAGAACTACAGCAAACTCAGTGTTGCACTTTCGGTGATGCATGAGTGTTTTGAGCCCCTTAAGAACCCTTTCACTAATAGAGATATCATTGATGATGTTATATTCAACACTAGGTCAGAGCTAAATCGATTGAATTTCCAGGGTTTCTACACGGTACTTCTGGAGAGAAATGAAGAATTGATTAGTGTAGCAACTATTAGGGTATTTGGACAGAAAGTAGCAGAGGTACCTCTTGTAGGTACCAGATTACAATATCGTCGACTTGGAATGTGTCGGATTTTAATGAATGAGCTTGAGAAGAAGCTCATGCAACTGGGAGTGGAGAGGCTAGTCTTGCCTGCTGTTCCTGGTGTGCTAGAAACATGGACCAATTCTTTTGGCTTTGCTACAGATGACAAATTTTGA 3255 0.419 MGTGPRSQNSARVPRGTTCMVCQRGPMRTKATQGTGNRGFSFGVASFIMCLVCAAFSFVMSLNQSPMDVDGVKCYGNRKHRRGSRKRKLLVNERVEVKSVEEGFLGSWHAGTVIRCERQKRHVKYDNILDDDGKKYLVDVVYVSAVLDGVDSSSDCSNERGFIRPLPPQLEFGERDLSFGRCVDVNYLEAWWEGVIFDQCNGMEERSVFFPDLGDEMKVGTRQLRITQDWDEATENWEPRGKWVFLELIEECERESFVAVSVKQIWYDVRARKDFDNIKHWTCNEKDMWRDLVVDVVGDYYTLTLQEVFPALNLPEDFLKEAPELKSVEATGNIHCDASHSNIFGSDIRHHTLQEEDDKDPLVDGASEKEILLGEEPVSPVQEILPDAGEVIPGASWGEKKRKRRCSTSICWQPMILTEVEFCPDVVNKYLLGCGSKTIRELLKAKVWKHLAYLGWTIEWTEDKYFPGRGRYRYKSPDAPDQKVYTSIIQVLTHMQMEPNMNSVQPQIDHNRMHSTNDTSLSHLLSDLPQNDQDLDVCPPNVEPSQVKVVFEPEFCPQAVVKYYLNASEKHWVDKGKWKLKAKKHLLAEGWSFDYPTKKRRTTLYKSPRNQCLGTLQGACRLYIKEKIPEWTNSGMIPLNVPAMNEGSVGHVDSDDLLQSLSQVLQKEPELHTASPVSRSTENRNHKRTRNSKATMPKRHRKGSPKRVLRSSKRVQKVSAPSLSHQRPQNVLSWLIDNNVLTPRFKKIYGLGGFVNHAGGSSDCRPSASIFLKDGRSLLECMIKVMHDQRTREDMMRPCNDLCEGENDNICSVCQYGGELILCDQCPSAFHRTCLGLEDIPDGDWFCPSCRCGICGQIKIEGTEDVLFLTCIQCEHKYHVGCLKNREKDESRRYMENWLCGKECEQIYAGLQSLLGKPVTVGVNNLTWTLVKFINSEISDVGNTKNDLLAENYSKLSVALSVMHECFEPLKNPFTNRDIIDDVIFNTRSELNRLNFQGFYTVLLERNEELISVATIRVFGQKVAEVPLVGTRLQYRRLGMCRILMNELEKKLMQLGVERLVLPAVPGVLETWTNSFGFATDDKF 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2659 1084 PANTHER PHD ZINC FINGER PROTEIN 62 746 - -
Ssu6g2659 1084 PANTHER PHD ZINC FINGER PROTEIN 746 1080 - -
Ssu6g2659 1084 ProSiteProfiles Zinc finger PHD-type profile. 808 853 IPR019787 -
Ssu6g2659 1084 MobiDBLite consensus disorder prediction 668 724 - -
Ssu6g2659 1084 MobiDBLite consensus disorder prediction 690 713 - -
Ssu6g2659 1084 Pfam Tify domain binding domain 747 784 IPR032308 -
Ssu6g2659 1084 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 802 852 IPR013083 -
Ssu6g2659 1084 Pfam PHD-finger 810 852 IPR019787 -
Ssu6g2659 1084 SMART agenet_At_2 175 232 IPR014002 -
Ssu6g2659 1084 SMART agenet_At_2 87 155 IPR014002 -
Ssu6g2659 1084 CDD NAT_SF 1002 1062 - -
Ssu6g2659 1084 Pfam Agenet domain 93 168 IPR008395 -
Ssu6g2659 1084 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 946 1084 IPR000182 GO:0016407
Ssu6g2659 1084 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 62 746 - -
Ssu6g2659 1084 SUPERFAMILY FYVE/PHD zinc finger 806 856 IPR011011 -
Ssu6g2659 1084 Gene3D - 968 1083 - -
Ssu6g2659 1084 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 997 1067 IPR016181 -
Ssu6g2659 1084 SMART ring_2 811 850 IPR001841 -
Ssu6g2659 1084 SMART ring_2 852 907 IPR001841 -
Ssu6g2659 1084 CDD PHD2_CHD_II 811 850 - -
Ssu6g2659 1084 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 853 907 IPR013083 -
Ssu6g2659 1084 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 746 1080 - -
Ssu6g2659 1084 SMART PHD_3 852 904 IPR001965 -
Ssu6g2659 1084 SMART PHD_3 810 851 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2659 Ssu-Chr6 61843970 61850706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2659 89 1050 PHD Transcription Factor Family AT5G58610 36.246 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu6g2659 Agenet 6.8e-16 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2659 - - gmx:102661511 1652.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2659 6 61843970 61850706 Ssu6g2659 6 61843970 61850706 ECH
Ssu9g1219 9 45043843 45051749 Ssu6g2659 6 61843970 61850706 PCT