Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2656 ATGGATCGGGTCAAATTTGAAGATGCATGTGCGgattttcttcttttgcttgACAATGAATTTGGAACCTTTTGTGTTTCCAGAATCAAGCAAAGGGCTGAAGAGCTATCAAGCGCTGTGGATCTGACGATAGGGGGCGTCCTTGAGAATGGAAGAGTAACAAAGAATCAGCTTGAAGAACTCAAAGAAGCAATATCAAAGCTACTTGAAGTTATCTCTGGCGAATCTCATCCACTTGGAGGCCTATCCTCTTTCAACCCAAAGAAGTTCATGTTTCGCCAGAGGGTTCGCAGCATGTTGAACGAGATACAAGCAAGGATATCTGATGCAGCTGAAACTGAAAGCAGCGTTTCTTGTATTCAGGCAAGGCCAATTGGACGGGACCAAGATGATGTTGATCGTAAACAAGTATATGGACGGGATGCTGATAAAGATGAGATTGTGAATTTTCTTCTTAGCCAAGCACGTGCCTCTCAGTTCCCTTCCATCTATCCCATCGTTGGCCCAGGTGGGTTCGGAAAAACAACACTTGCCCAAATGGTCTACAATAATAGAGAGGTAAGAAGCCATTTTGACGAAAGAATTTGGGTTTCTGTTTCTAACAATTTCTCTGTCAAGAAGATTCTGTGCTCCATTATAGAATCCGTAGCACGAGAAAAGTACAGTGTCTACGATTTAGACGTAATAGAAAGAAAAGTGCGAGACCTGTTGCAATTTAAAAGATATCTGCTAGTTTTAGATAATGTGCGGACAAATCTACCATTGGAAAAGTTAAAATCTGTGTTGTCTTGTGGATCCAAAGGTACTTGCATTTTAGTAACCACTCGCGATATGGATGTTGTGAAAACCATGGGAACATGCTTAATTCATCATTTGTCCCCTCTATCTCCCGTTGTCAATTATCGTCTTTTCAAGCACTATGCATTTGGACCTGGCTGTGTGCCTCCAGAGCTTTTAAGCATGGCCCTCAGGTCAGCAATGAAGTGTATGGGATCGCCGCTTGAAGCATTAGCATTGGGAAGTCTGCTCCGCTCTAAGAGTGAAGAAAAGCAGTGGCTTGAAGTTTTGGAAAGTTGGTATTGGCGTTCTCCAGATGAGAATGAGGATTATGGTCTGACAACTTTGGGGATGATCTACTCTGATTTAACTCGAAGCTCAAGGCTGTGTTTTGCTTTCTGTGCCATATTTCCCCCAAATACAGAAATCATGAAGGAAGATTTGATTCATCTCTGGGTGGCGAATGGGTTCATATCATCTGGGGAAAACTTGGAGGTTGAGGAAGTTGGCGATATAATTTGGAATGAATTGTACGAAAAATCATTCTTCACAGATATCAAGATAGATGATTATTCAGGGGACATTTCTTTCACGATGCTTGATCTTGTCCATGGTTTTGCTCGGTCAGTTAGTGGGCAAGAGTGTGTGATTTTGGACAATGTTAACATGACTGATTTGTCAACAAGCACACTCCATGTTGGTTTTGGCTCTGATTTATTATCATTCAACAAGGGAGTTCTCCagaaacttgaatttttgcAAACATTGTATCAGTTTGAATTTGCATTTCACAACACAATCTCTGGTTGTTTTCCAACAAACCATTCGCTTCGGGTTTTAAGTACAAGTTATTTCAAGTTGTCGTCACTCAGGAACTTAATTCATTTGAGGTATTTGGAGCTTTATGGTCTTGAGATAAAAAACCTCCCTAACTCAATTTATAGCCTGCAAAAGTTGGAAACTTTGAAATTGAGATCTTGTCGTAAACTTGTGTGTCTACCAAAACACTTGACTCGCTTACAGAATCTCAGACATCTTGTCGTTAGTGAATGTTCATTATCTAGTATGTGCCCTAACATCCGCAAATTATCTTGCCTAAGAACATTAAGTTTATTCATTGTTAGTTCAAAGACAGGGCAGAAATTGGAAGAGATAGGTGGCCTAAACCTGGGAGGAAAACTACGCATTGAAGGCCTAAAAAATGTTACCAGTGCATCTGAAGCTGAAAGAGCCAAATTGAAGGATAAAGAAAAACTACGTGAGTTATGCTTGTCATGGGACAACAGTGGTGAATCCAAGTCAAATGCTTCTACGAAAGCTGAGGAAGTACTTCAAGCACTCCAACCTCCCCCAAATCTGAAGACATTGAGAATATATGATTATGAAGGATCACGCTTGCCGAGTTGGATTCAAAATCTCGAAAGTTTAGTTGCTCTTGAACTTTTTGATTGCAAAGAGTGTCTGCAGCTTCCAGAACTCGGTAAACTACCATCTCTGAGAAAGCTTGAAATATTTTCTATGGATGATGTGCAGTACATGGATGATGATGAATCCGATGGTGTGAAGGTGAGTTTCCCATCTCTGGAGCAACTCGAGGTTCGAGGGTTACCAAACTTACAGCAGTTGTTGAAAGTGGAAAGAGAGATGATGTTCCCCCGTCTTTCTAATGTTACCATCGATGATTGCTCTAAACTTCAGTTGCCATCTGTTCCATCTATTAAACAACTCAATATAAGGGGATGTAATCATGAGTTACTACGGTCAATCTCTAATTTCAATGGTCTTACCTTCCTTAACCTGTCTGGAGGCAAAGACCTGACATCCTTCCCAGAGGGACTGATGAGAGACATGACTTGTCTTAGAGTTATGATACTATATGATTTCCCGAAATTGAAGGTATTGCCAGACGAACTCCACCTCAAAGCTTTGGAGCGTTTGGAAATCATACGATGCAGCGAGCTTGAGTCTTTACCAGAGCAAATATGGAAAGGTCTTTGCTCCCTTCAATATTTGGAGATTGCCTACTGTGGAAGATTGAGATCCTTGCCAAAAGGTGCCGGAGAAGCTGAATCACTTGAGGTTCTGAGAATTGAATGCTGCCCAGAACTGGAGAAGAAATATAAGGAGGGAACTGGAGAGGACTGGATTAAGAAAGCACACATTCGAAAGGTAATTTAG 2955 0.4071 MDRVKFEDACADFLLLLDNEFGTFCVSRIKQRAEELSSAVDLTIGGVLENGRVTKNQLEELKEAISKLLEVISGESHPLGGLSSFNPKKFMFRQRVRSMLNEIQARISDAAETESSVSCIQARPIGRDQDDVDRKQVYGRDADKDEIVNFLLSQARASQFPSIYPIVGPGGFGKTTLAQMVYNNREVRSHFDERIWVSVSNNFSVKKILCSIIESVAREKYSVYDLDVIERKVRDLLQFKRYLLVLDNVRTNLPLEKLKSVLSCGSKGTCILVTTRDMDVVKTMGTCLIHHLSPLSPVVNYRLFKHYAFGPGCVPPELLSMALRSAMKCMGSPLEALALGSLLRSKSEEKQWLEVLESWYWRSPDENEDYGLTTLGMIYSDLTRSSRLCFAFCAIFPPNTEIMKEDLIHLWVANGFISSGENLEVEEVGDIIWNELYEKSFFTDIKIDDYSGDISFTMLDLVHGFARSVSGQECVILDNVNMTDLSTSTLHVGFGSDLLSFNKGVLQKLEFLQTLYQFEFAFHNTISGCFPTNHSLRVLSTSYFKLSSLRNLIHLRYLELYGLEIKNLPNSIYSLQKLETLKLRSCRKLVCLPKHLTRLQNLRHLVVSECSLSSMCPNIRKLSCLRTLSLFIVSSKTGQKLEEIGGLNLGGKLRIEGLKNVTSASEAERAKLKDKEKLRELCLSWDNSGESKSNASTKAEEVLQALQPPPNLKTLRIYDYEGSRLPSWIQNLESLVALELFDCKECLQLPELGKLPSLRKLEIFSMDDVQYMDDDESDGVKVSFPSLEQLEVRGLPNLQQLLKVEREMMFPRLSNVTIDDCSKLQLPSVPSIKQLNIRGCNHELLRSISNFNGLTFLNLSGGKDLTSFPEGLMRDMTCLRVMILYDFPKLKVLPDELHLKALERLEIIRCSELESLPEQIWKGLCSLQYLEIAYCGRLRSLPKGAGEAESLEVLRIECCPELEKKYKEGTGEDWIKKAHIRKVI 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2656 984 Pfam NB-ARC domain 141 358 IPR002182 GO:0043531
Ssu6g2656 984 SUPERFAMILY L domain-like 458 824 - -
Ssu6g2656 984 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 133 393 IPR027417 -
Ssu6g2656 984 Gene3D Ribonuclease Inhibitor 499 822 IPR032675 -
Ssu6g2656 984 SUPERFAMILY RNI-like 795 959 - -
Ssu6g2656 984 Gene3D - 130 288 IPR027417 -
Ssu6g2656 984 PANTHER DISEASE RESISTANCE PROTEIN RP 59 918 IPR044974 GO:0006952
Ssu6g2656 984 Gene3D - 374 469 IPR036388 -
Ssu6g2656 984 PRINTS Disease resistance protein signature 163 178 - -
Ssu6g2656 984 PRINTS Disease resistance protein signature 329 343 - -
Ssu6g2656 984 PRINTS Disease resistance protein signature 573 589 - -
Ssu6g2656 984 PRINTS Disease resistance protein signature 236 250 - -
Ssu6g2656 984 PANTHER OS05G0414200 PROTEIN 59 918 - -
Ssu6g2656 984 Gene3D Ribonuclease Inhibitor 825 969 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2656 Ssu-Chr6 61761197 61764151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2656 547 636 WRKY Transcription Factor Family AT4G12020 38.462 3.92e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2656 - - mtr:MTR_5g071220 886.715