Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2648 ATGAAGCTCTTGACATCATCATCTTATTCATCATCCCCATCATCTTCATCAGCCCTCAGTTTGGATCCAACTTTGTGCCCCTCCCAAAGTGGGTGTCTCACAGCCATCTTGCGCAGGATTCTCTGCTCTGGGGGCCTTCCAACACACCCATCAGACCAAATCAGAGAACTTGAGTCAATGCCAAAGATGAGTGGCAAAGTTCAAGAATTGAAGACTAAACAAAACACTGAAtctaccgccaccaccaccactactactatTTCTCCTGGCTTAGTGGGAAGGTTAATGGGTTTGGAATCAATGGGGGAGAGAGAGACAACCACTGAAGCAACATCAAGTTCTTCACTTTCACGTAGCAAATCCATGAACTCTGTGGACTACTTGGGAGAATGCAAGCGAATGGAGGGTCTTCATAGACGTGTTAAATCTTCATCATTCCGTGAGGTTCCAACTTTCCACTTGCTTGAAAATGATAACTTCTTGGTACTCAGCTTCGAAAGTGGATGTGATGGTGGAGAATTCAGGTCCAAAGggagtaaaaaagaaaagtgtttaaaagagaGAGGTCAGTTCAAGaaaaacaagagagaaaagGTGCATGATGAGAAGGGGAACTTATCTGACATGTCTTCTGCCAATGTTGGAGATCATGGTAAACATAAACTTCAATTAGCCAACACTTCGACACTGTTCATGGCTTGTGATGAAAAGGAGTACAGTGATTCAGAAACGGCGAGATTCTCACACACCGTGAAGCGCAAGGAAGTTACCAATGGtgagaaagtgaagaggagaAAGAAGGGAACAAACCGTTACGCAGAAAAGAAGGTGGACACTGAATGCAGTTCGGAAGATTCGAGCCCAGTTTCTGTCTTTGATTTTGAGCGTGAAGCTCCTGAAACAGAGGTGGATTCTTTTGGCGTTGATACGAGTTGGAGAAGAAAATTGTCACCAGAGCTTGAAAATGAGCAGCTTCATGTTCTGCATTGTGATAGTAACTTGATGATTGAAGAGATGAAGGTTAATACAATTGAAGACAACAAACATGAAGGgttgaagagaaaagataagcaaagcCAGGAGTGTGTAGATATTTGGGGAGAAATTTGTAGGCTAGTGGAAGATGAATTGGGATCAAATAAGTTAGAGGAAGGATTGAGGAAACAAAGTGATTTTGAAAGTGTATGTGCAGATTGTGAGTCAGAAATTTTCGATCATTTGTTATATGAGCTCATAGATCAACTTATTGGGAATTCCTTGAAAGCATTGCAacttcaaaatttgtaa 1287 0.38 MKLLTSSSYSSSPSSSSALSLDPTLCPSQSGCLTAILRRILCSGGLPTHPSDQIRELESMPKMSGKVQELKTKQNTESTATTTTTTISPGLVGRLMGLESMGERETTTEATSSSSLSRSKSMNSVDYLGECKRMEGLHRRVKSSSFREVPTFHLLENDNFLVLSFESGCDGGEFRSKGSKKEKCLKERGQFKKNKREKVHDEKGNLSDMSSANVGDHGKHKLQLANTSTLFMACDEKEYSDSETARFSHTVKRKEVTNGEKVKRRKKGTNRYAEKKVDTECSSEDSSPVSVFDFEREAPETEVDSFGVDTSWRRKLSPELENEQLHVLHCDSNLMIEEMKVNTIEDNKHEGLKRKDKQSQECVDIWGEICRLVEDELGSNKLEEGLRKQSDFESVCADCESEIFDHLLYELIDQLIGNSLKALQLQNL 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2648 428 MobiDBLite consensus disorder prediction 259 280 - -
Ssu6g2648 428 MobiDBLite consensus disorder prediction 104 121 - -
Ssu6g2648 428 MobiDBLite consensus disorder prediction 189 205 - -
Ssu6g2648 428 PANTHER - 1 424 - -
Ssu6g2648 428 MobiDBLite consensus disorder prediction 102 121 - -
Ssu6g2648 428 MobiDBLite consensus disorder prediction 1 22 - -
Ssu6g2648 428 MobiDBLite consensus disorder prediction 189 219 - -
Ssu6g2648 428 PANTHER OS05G0128300 PROTEIN 1 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2648 Ssu-Chr6 61698741 61700458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2648 31 415 TRM (TON1 Recruiting Motif) Superfamily AT5G58630 29.563 2.22e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2648 - - gmx:102660974 609.757