Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2647 ATGTGCGGTGTTTCCAAGAGGGAACTTTCTCAAATTGATTTGGTCATGGAGGATGAGTATGGAAAAGAAGGGATGCATAATAAAATTTCTGCTTTGCTAGAGTTTTCAGCTGCGGATGATGTAATTGGTTTCAAAGATGCGGTCGAAAAGGAGGGTCATGATGTTGATGGGGTGGGGTTGTGGTATGGAAGGCGTGTTGGCTcaaagaaaataggttatgaaGAGAGGACACCTCTCATGGTTGCTTCTATGTTTGGAAACATTGGTGTAACAACTTATATTCTTGGAACAGGTTGCGTTGATGTTAACCGGGCTAGTGGGTCAGATGGGGCTACTGCTCTTCATTGTGCTGTTGCTGGGGGTTCTGCTGCTTCGGTCGAGGTGGTCAAGCTTTTGCTTGATGCATCTGCTGATGTTAGTGCTGTTGATGCCAACGGTAACCGGCCCCTTGACTTGATTGTCCCTGTGGCTAATTCTATCTTCAATCCAAGGATAAGGGTGCTACAAGCCCTGCTGGAGGGTACAGGTGGTGCTGATCAGGCATGTTTCACACTTCCTGAAGTGATTGACCGAATTGAGGAGCAAAGGCAAGATATGAACACACCTCGTGTTTCGAAAGATTATCCCGTTGATCTCTCCCTTCCAGACATAAAGAATGGGATATATGGTACTGATGAGTTTAGGATGTATTCCTTCAAAGTGAAGCCTTGTTCAAGGGCGTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCATCCGGGGGAAAATGCAAGGCGGCGTGATCCAAGGAAGTATCATTACAGCTGTGTCCCTTGTCCCGAGTTCCGGAAGGGATCTTGCAGCAAGGGCGATGCCTGCGAGTACGCGCATGGTATTTTTGAGTGCTGGCTTCACCCTGCCCAGTATCGGACTCGGCTGTGCAAGGATGAGAGTGGATGCTCAAGGAGAGTTTGCTTCTTCGCTCACAAGCCTGAGGAGCTTCGCCCCTTGTATGCTTCTACTGGTTCTGCCATTCCTTCTCCCAGGTCATATTCTGTTAGTGCTTCTGCATTGGAGATGGGTTCGGTTAGCCCAATTGCACTTGGTTCTCCATCTGTCTTGATGCCACCTGCCTCAACACCACCTTTGACTCCATCTGGAGCATCTTCTCCGGTTACATCCATGTGGACTCAATCTAATGTTTCGGTCCCTACGCTGCAGCTGCCCAAGAGTAGATTGAAGACTGCATCAACTGCAAGGGATATTGATTTAGATATTGAACTGCTTGGACTTGAAACTCAGCGACGTAGACAACAGCTGATGATGGATGAGATATCTGGTCTTTCCTCTCCTTCCAACTGGATAAATTCCATGCCTAACAGCCCATCATATCGTGTTTCCTTGAGTGATCATGCTGGGGAATTAAATAGGCTTTCAGGGGTGAAGCCTTCTAACCTTGAAGACATCTTCGGATTGCTCGATCCATCAATTTTGTCTAAATTCCATGGAATCTCACTCGATGTTGCAGGACCTCAGTTACAATCTCCAACTGGAATCCAGATGCGCCAGAATGTGAACCAGCAGCTAGGAGGCTATTCTTCCAGCCTTTCCACTTCAAAAATGATTGGATCGCGGTCCTTTAGAGTTGATCCATCCGGGGAAGCAGCTGCAGTGGCTTTGAATCCAAGAGCTGCTGCCTTTTCAAAGCGGAGCCAGAGCTTTATCGAGCGTAGCGTGGTGAACCATCACTCTGAGCTTCCTTCTCCAAAGCCCTCAACCTTCTCTAACTGGGGCTCACCTGATGGAAAATTAGATTGGGCCATAAACGGAGAAGAGCTGAATAAGCTGAGGAAATCTGCTTCCTTTGGATTTCGAAGCAGCAGTAGTCCTCTAACAAAGACTTCAACCCAAGTTCCAGCAAATGTTAATGATGAGCCAGATGTGTCTTGGGTTCACTCACTTGTGAAGGATGCTCCGCCAGAATCTGGTGAATATAGCATCGAAGATCGGCGAAAGCAACTGCAATGCCACAATGGAACAGATGCAATTCCAGCGTGGTTGGAGCAATTGTACTTGGAGCAGGAGCAAATGGTGGCGTGA 2079 0.4728 MCGVSKRELSQIDLVMEDEYGKEGMHNKISALLEFSAADDVIGFKDAVEKEGHDVDGVGLWYGRRVGSKKIGYEERTPLMVASMFGNIGVTTYILGTGCVDVNRASGSDGATALHCAVAGGSAASVEVVKLLLDASADVSAVDANGNRPLDLIVPVANSIFNPRIRVLQALLEGTGGADQACFTLPEVIDRIEEQRQDMNTPRVSKDYPVDLSLPDIKNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDESGCSRRVCFFAHKPEELRPLYASTGSAIPSPRSYSVSASALEMGSVSPIALGSPSVLMPPASTPPLTPSGASSPVTSMWTQSNVSVPTLQLPKSRLKTASTARDIDLDIELLGLETQRRRQQLMMDEISGLSSPSNWINSMPNSPSYRVSLSDHAGELNRLSGVKPSNLEDIFGLLDPSILSKFHGISLDVAGPQLQSPTGIQMRQNVNQQLGGYSSSLSTSKMIGSRSFRVDPSGEAAAVALNPRAAAFSKRSQSFIERSVVNHHSELPSPKPSTFSNWGSPDGKLDWAINGEELNKLRKSASFGFRSSSSPLTKTSTQVPANVNDEPDVSWVHSLVKDAPPESGEYSIEDRRKQLQCHNGTDAIPAWLEQLYLEQEQMVA 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2647 692 SMART ANK_2a 109 141 IPR002110 GO:0005515
Ssu6g2647 692 SMART ANK_2a 74 104 IPR002110 GO:0005515
Ssu6g2647 692 MobiDBLite consensus disorder prediction 618 636 - -
Ssu6g2647 692 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 271 291 IPR000571 GO:0046872
Ssu6g2647 692 Gene3D - 267 329 - -
Ssu6g2647 692 ProSiteProfiles Ankyrin repeat profile. 109 144 IPR002110 GO:0005515
Ssu6g2647 692 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 21 691 - -
Ssu6g2647 692 Pfam Ankyrin repeats (3 copies) 69 142 IPR002110 GO:0005515
Ssu6g2647 692 ProSiteProfiles Ankyrin repeat region circular profile. 109 143 - -
Ssu6g2647 692 SMART c3hfinal6 266 292 IPR000571 GO:0046872
Ssu6g2647 692 SMART c3hfinal6 301 324 IPR000571 GO:0046872
Ssu6g2647 692 ProSiteProfiles Zinc finger C3H1-type profile. 271 293 IPR000571 GO:0046872
Ssu6g2647 692 Gene3D - 24 163 IPR036770 -
Ssu6g2647 692 SUPERFAMILY Ankyrin repeat 71 158 IPR036770 -
Ssu6g2647 692 MobiDBLite consensus disorder prediction 618 637 - -
Ssu6g2647 692 PANTHER UNKEMPT FAMILY MEMBER 21 691 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2647 Ssu-Chr6 61692251 61694329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2647 1 687 C2H2 Transcription Factor Family AT5G12850 38.482 6.54e-144 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu6g2647 Ank_2 7.2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2647 - - gmx:100795085 1210.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2647 6 61692251 61694329 Ssu6g2647 6 61692251 61694329 ECH