Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2645 ATGAATGAAAATACTTCACACCATATTGCTAGATCTTCCTGCTATAGTTCAAATTTCGAAGGAAACTTTGATTTAGCAGATTTCAAGTCTCTTAATCGACTTCTCACTGAAAAGGTTGGCTGGCAGGGTCAAGCCATATGTGCTATCTGTCAAACTTTGTCCCTTTGTAAATCTGGTGTAGGAAAGCGTAGAGGCTCACATGGTAAAGCAGACATATGGTTTTCTTTCCTTGGACCAGATAGACTTGGAAAGAAGAAAATTGCTTCAGTTCTTGCAGAGACTATATTTGGAAACTCTGAAAGCCTAATCTCTGTGGATCTGGGCTTTCAGGATGGCTTTTACCCGTTGAACTCGATTTTTGAATGCAAAAAATCACATTGTTATGATGTGCTTAGGAGGAAGACAGTTGTGGATTATATTGCTGGGGAGTTGAGTAAAAAACCCCATTCCGTTCTATTTCTTGAAAATGTAGATAAAGCCGATTTTCTGGTACAGACTAGTTTGTTGCAGGCGGCAAGAACAGGCAAATTTCCAGATTCGCATGGAAGGGCAATTAGCATCAATAATGCAATTTTTCTTGTAACCTCAACTGTCTGTAAAGGTAATAGCTCTTTTGTTTTGGAGGATTCTAAGATGTTTTCTGAGGAAAGAATCCTTGAAGCCAAAAAATGTCAAATGCAATTATCACTTGGACATGCATCTGAGGATGCCAAAAGAATTGGCAGCACAAATGTTAACGTTGTACCCAGAAAAGGGTTTTCCAAATCATCATCTCTGAACAAAAGAAAGCAGGCTGATGTAAGTGACTCCAAGGAGGGAGCAACAAGCAAGATGCAGAAACAGGACAGCGAGGCATCTCGATCCTATCTCGATCTAAATATGCCTGTAGAGGAGGGTGAAGAAGGTATCAATGAATGA 918 0.3987 MNENTSHHIARSSCYSSNFEGNFDLADFKSLNRLLTEKVGWQGQAICAICQTLSLCKSGVGKRRGSHGKADIWFSFLGPDRLGKKKIASVLAETIFGNSESLISVDLGFQDGFYPLNSIFECKKSHCYDVLRRKTVVDYIAGELSKKPHSVLFLENVDKADFLVQTSLLQAARTGKFPDSHGRAISINNAIFLVTSTVCKGNSSFVLEDSKMFSEERILEAKKCQMQLSLGHASEDAKRIGSTNVNVVPRKGFSKSSSLNKRKQADVSDSKEGATSKMQKQDSEASRSYLDLNMPVEEGEEGINE 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2645 305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 198 IPR027417 -
Ssu6g2645 305 Gene3D - 10 245 IPR027417 -
Ssu6g2645 305 MobiDBLite consensus disorder prediction 249 305 - -
Ssu6g2645 305 MobiDBLite consensus disorder prediction 262 278 - -
Ssu6g2645 305 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 12 301 - -
Ssu6g2645 305 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 74 92 IPR001270 GO:0005524
Ssu6g2645 305 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 153 171 IPR001270 GO:0005524
Ssu6g2645 305 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 186 200 IPR001270 GO:0005524
Ssu6g2645 305 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 12 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2645 Ssu-Chr6 61674685 61675602 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2645 - - gmx:100818456 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2645 6 61674685 61675602 Ssu6g2645 6 61674685 61675602 ECH
Ssu6g2645 6 61674685 61675602 Ssu9g1209 9 44876366 44878186 ECH
Ssu7g2631 7 52219868 52223606 Ssu6g2645 6 61674685 61675602 ECH
Ssu9g1208 9 44845503 44851309 Ssu6g2645 6 61674685 61675602 PCT