Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2637 ATGCACATGAACACCTACTCAGAGGCCACCACATCACGACCAATGCCACCCACCGTCGATGAAGATTTGGAGAACAACACGGAGCTTTGCAAAGGTACTAATACAAATACACCGATGGTGAGAAAGAAGTCAGAACTAGTTGTGGTCACAAATAACGTCCGTTTCCAAATGCTTAGAAGTTTCATGACCAATTTGCAAGTGGTCTTTCTTGGCACTAAGCTTGTCGTGCTTTTTCCGGCAGTCCCTTTAGCTGTTGTTGCAAATTTTTGTAGCTTTGGAAGGCCTTGGATTTTTGCTTTCAGTCTGATTGGACTTGCTCCGCTAGCTGAACGTGTCAGCTTCCTGACTGAGCAAATTGCATATTACACTGGCCCAACAGTTGGAGGCCTTCTGAATGCAACATGTGGAAATGCAACCGAGATGATAATAGCATTATTAGCACTTCACCAGAACAAAGTAAATGTTGTGAAGTTCTCCCTGCTGGGTTCCATTCTCTCAAACCTTCTCTTGGTTCTTGGCAGTTCACTTCTCTTTGGTGGTTTAGCCAATCTCAAGAGAGAGCAAAGATATGACAGAAAACAGGCTGATGTAAACTCACTGGTTTTGTTGCTGGGGTTGTTGTGCCATTTGCTGCCATTGCTGTTCAAATACGCCTTAGCAGGGGGCGATCATTCTATTGCCACCAACACTCTTCAGTTGTCCAGAGCAAGCAGCATTGTTATGCTTCTAGCATACGTCGCATACATCTTCTTCCAATTAAAAACTCATCGAAAATTGTTTGATGCACAAGAGGAAGACGAAGATGAAGAGAAGGCGGTGTTAGGATTTTGGAGTGCATTTACCTGGTTGGTGGGTATGACATTGGTCATATCTGTACTTTCTGAATATGTTGTGGGAACCATTGAGGCTGCTTCAGATTCTTGGGGCATTTCTGTAAGCTTCATTAGCATAATTTTGCTACCAATTGTTGGAAATGCTGCAGAACATGCCGGTTCAATCATATTTGCTTACAAGAACAAGTTGGACATATCTTTGGGTGTTGCTATGGGATCCGCAACTCAAATTTCTATGTTTGTGGTTCCATTAAGTGTAGTTGTTGCATGGATAATGGGTATACGAATGGATTTGGACTTCAGTCTTCTTGAAACTGGATGTCTTGCTTTTACAATTATAGTGACAGCATTCACTTTACAGGATGGAACTTCACACTACATGAAAGGAGTGGTTCTTACTCTGTGTTACGTTGTCATTGCTGCATGTTTTTTTGTCCTCAAAACTCCTCTAATTGACCAATATCCTAGGGCCAATTTTGGAGCTAAACCATCCTTTGAAGCCATCACCACTTGA 1347 0.4239 MHMNTYSEATTSRPMPPTVDEDLENNTELCKGTNTNTPMVRKKSELVVVTNNVRFQMLRSFMTNLQVVFLGTKLVVLFPAVPLAVVANFCSFGRPWIFAFSLIGLAPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIIALLALHQNKVNVVKFSLLGSILSNLLLVLGSSLLFGGLANLKREQRYDRKQADVNSLVLLLGLLCHLLPLLFKYALAGGDHSIATNTLQLSRASSIVMLLAYVAYIFFQLKTHRKLFDAQEEDEDEEKAVLGFWSAFTWLVGMTLVISVLSEYVVGTIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAYKNKLDISLGVAMGSATQISMFVVPLSVVVAWIMGIRMDLDFSLLETGCLAFTIIVTAFTLQDGTSHYMKGVVLTLCYVVIAACFFVLKTPLIDQYPRANFGAKPSFEAITT 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2637 448 Pfam Sodium/calcium exchanger protein 96 253 IPR004837 GO:0016021|GO:0055085
Ssu6g2637 448 Pfam Sodium/calcium exchanger protein 279 420 IPR004837 GO:0016021|GO:0055085
Ssu6g2637 448 TIGRFAM cax: calcium/proton exchanger 79 422 IPR004798 GO:0006816|GO:0015369
Ssu6g2637 448 PANTHER VACUOLAR CATION/PROTON EXCHANGER 23 432 - -
Ssu6g2637 448 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 23 432 IPR004713 GO:0006812|GO:0008324|GO:0016021
Ssu6g2637 448 TIGRFAM caca2: calcium/proton exchanger 60 422 - -
Ssu6g2637 448 Gene3D - 271 423 IPR044880 -
Ssu6g2637 448 Gene3D - 125 267 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2637 Ssu-Chr6 61515854 61520165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2637 34 427 Antiporters AT2G38170 67.990 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2637 K07300 - gmx:100802344 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2637 6 61515854 61520165 Ssu6g2637 6 61515854 61520165 ECH
Ssu9g1200 9 44630871 44636617 Ssu6g2637 6 61515854 61520165 PCT