Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2636 ATGGATGAAATATCAACTGGTCTTGATAGCTCTACTACGTACCAGATAGTAAAATGCATAAAGAATTTTGTTCATCAGATGGAGGCTACAGTACTCATGGCTCTCCTTCAGCCGGCTCCTGAAACATTTGAGCTATTTGATGATCTGGTGCTTCTGTCAGAAGGGCACGTGGTATATGAAGGCCCTAGAGAGGATGTACTCGAGTTTTTTCAGTCGTTAGGTTTCCAACTTCCACCTCGTAAGGGGATCGCAGACTTTCTCCAGGAGGTGACCTCTAAAAAGGATCAATCACAATACTGGGCTGATCCTTCAAAACCATATGAGTTCGTCTCAGTTCCCGACATTGCACAAGCCTTTAGAAATTCCAAATTTGGAAGGTATATGGAATCCATGCAGACTCATCCATATGATAAATCAAGAAGTCATCCTTCAGCTTTGGCTAGAACTAAATATGCCGTGTCAAGATGGGAGGTTGCTAAAGCTTGCTATGCACGAGAAGTCCTTTTGATCAGAAGGCATcgctttctttatatttttaggacCTTCCAGGTTGCTTTTGTTGGATTTGTCACATGTACAATATTCCTGCGAACAAGGTTACATCCCACGAATGAGGTTTACGGAAACCTCTATCTTTCTGCTCTATTTTTTGGGCTGGTTCACATGATGTTTAATGGGTTTTCTGAGCTGCCCATTATGATAACTCGGCTTCCAGTATTTTATAAGCAAAGAGATAATTTATTCTATCCTGCATGGGCGTGGTCTCTTACCAGTTGGATTCTCCGTGTACCATATTCCGTTGTTGAGGCTGTTATATGGAGTCTTGTTGTATATTACACTGTTGGATTTGCCCCAGCAGCGGGAAGGTTTTTTCGCTAcatgtttttactttttgtaatgCATCAAATGGCATTAGGTCTCTTCCGGATGATGGCTTCTATTGCACGAGATATGGTTCTTGCCAATACATATGGATCAGCTGCACTACTTCTTGTATTCTTATTGGGAGGATTTATTGTACCTAAAGGAATGATTAAACCATGGTGGATTTGGGGCTACTGGTTGTCACCCCTTACCTATGGACAACGTGCTATTACAGTTAATGAATTTACTGCTTCAAGATGGATGAAGAAATCCGCAACTGGGGACAGCACAGTTGGTTACAATGTCCTCCATGCAAACAGCCTACCAAGTAGTGACTACTGGTATTGGATTGGTGTTGGAGTTTTAATAGTCTATGCACTTTTTTTCAACAACATGGTCACTGTGGCATTGGCCTATCTGAATCCACTTCATAAAGCACGAACAGTTATCCCTTCTGATGATGACTCGGAAAAGAATTATTCCAAAGATGTCAGTAATCAGGTCTATGAATTGGGTACCCGTACCAGATCCGCAAGAGAGGACAGTAATAAGAAAGGAATGATTCTTCCATTTCAACCACTGACAATGACATTCCATAATGtcaattattttgttgatatgCCAAAGGAGATAAGCAAGCAAGGCATACCTGAAACTCGGTTGCAGCTCTTGACAAACGTGAGCGGAGTTTTCTCACCTGGTGTCCTTACCGCATTAGTGGGGTCTAGTGGGGCTGGAAAGACCACTTTAATGGACGTACTGGCTGGCAGGAAAACTGGAGGGTACATAGAAGGGGAAATTAAAATTTCGGGTTACCCAAAAGAGCAACGAACATTTGCCAGAATATCAGGATATGTTGAACAAAATGATATACATTCTCCTCAAGTAACAGTTGAGGAGTCGCTACTGTTTTCTTCATCTCTTCGTCTTCCAAAGGAAGTTGGAATTGCTAAAAGACTTGAATTTGTTGAACAAGTGATGAAACTAGTTGAGCTTGATAATTTGAGACATGCTTTGGTTGGTATGCCAGGTAGTTCTGGCTTATCAACAGAGCAGAGAAAGCGATTAACAATAGCAGTGGAGCTTGTAGCAAACCCTTCCATTATTTTTATGGATGAGCCCACTTCTGGACTTGATGCACGTGCAGCAGCTATTGTTATGCGAGCTGTTCGAAATACTGTTGATACTGGTAGAACTGTGGTTTGCACCATACATCAACCAAGCATTGATATATTTGAAGCATTTGATGAATTACTTCTTATGAAACGTGGGGGACGAGTAATATATGGGGGAAAGCTTGGTGTGCAATCACAGATAATGATAGACTACTTTCAGGGAATCAGGGGAATTCCTCCCATTCCAAGTGGCTACAATCCGGCTACCTGGGTGCTTGAGGTTACTACACCTGCTACCGAAGAGAGAATTGATGCAGATTTTGCAGAAATTTACAATAATTCAGAGCGATACAGGGAGGTGGAGTCTTCTATTTTGCGATTTGCACAGCCTCCTGCAGGCTCTGAACAACTGAAGTTTGGCACCACATATTCACAGAACCTGTTGAACCAATTTTTTCAATGCTTATGGAAGCAAAATCTTGTGTACTGGAGAAGTCCGGCGTATAATGCCATGAGGATATACTTCACCACGATAAGTGCTTTGATATTTGGTACCGTATTTTGGGATGTTGGTTCAAAAAGGGCATCAGCTCAAGAGCTGTTTGTGGTTATGGGAGCTCTTTATTCTGCATGCATGTTTCTTGGGGTAAACAACTCTTCTTCTGTACAGCCAATTGTTTCAATAGAAAGGACAGTGTTTTATAGAGAGAAAGCAGCTGGAATGTACTCTCCAATCGCTTATGCGGCAGCCCAGGGGCTTATAGAGATACCATACATTGCTGTTCAGACGATAGTATTTGGTATAATCACATATTTCATGATCAATTTTGAAAAGACAGCCGGAAAGTTTTTTCTCTATCTTGTGTTCATGTTCCTAACGTTCACCTACTTCACATTCTACGGCATGATGGCTATTGGTCTTACACCTTCCCAACATCTAGCAGCTGTTATTTCCTCAGCATTTTACTCCCTGTGGAATCTTCTCTCAGGTTTTCTCATCCCAAAAGCGAGTATTCCCGGCTGGTGGATTTGGTTCTATTATATCTGCCCGGTTGCATGGACGTTACGTGGTATTATCACGTCTCAGCTTGGTGATGTGGAAACCAAAATTGTGGGACCTGGATTCGAGGGCACCGTGAAAGAGTATTTATCTGTTTCTCTTGGATACGAAACTAAAATCAACGGATTTTCGTCTGTGGGCCTTTCAGTGATTGTGCTTCTTGGATTTATTATTCTGTTCTTTGGTTCTTTCGCTGTATCAGTCAAAATCTTGAATTTCCAAAAGAGATGA 3270 0.4116 MDEISTGLDSSTTYQIVKCIKNFVHQMEATVLMALLQPAPETFELFDDLVLLSEGHVVYEGPREDVLEFFQSLGFQLPPRKGIADFLQEVTSKKDQSQYWADPSKPYEFVSVPDIAQAFRNSKFGRYMESMQTHPYDKSRSHPSALARTKYAVSRWEVAKACYAREVLLIRRHRFLYIFRTFQVAFVGFVTCTIFLRTRLHPTNEVYGNLYLSALFFGLVHMMFNGFSELPIMITRLPVFYKQRDNLFYPAWAWSLTSWILRVPYSVVEAVIWSLVVYYTVGFAPAAGRFFRYMFLLFVMHQMALGLFRMMASIARDMVLANTYGSAALLLVFLLGGFIVPKGMIKPWWIWGYWLSPLTYGQRAITVNEFTASRWMKKSATGDSTVGYNVLHANSLPSSDYWYWIGVGVLIVYALFFNNMVTVALAYLNPLHKARTVIPSDDDSEKNYSKDVSNQVYELGTRTRSAREDSNKKGMILPFQPLTMTFHNVNYFVDMPKEISKQGIPETRLQLLTNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGEIKISGYPKEQRTFARISGYVEQNDIHSPQVTVEESLLFSSSLRLPKEVGIAKRLEFVEQVMKLVELDNLRHALVGMPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVQSQIMIDYFQGIRGIPPIPSGYNPATWVLEVTTPATEERIDADFAEIYNNSERYREVESSILRFAQPPAGSEQLKFGTTYSQNLLNQFFQCLWKQNLVYWRSPAYNAMRIYFTTISALIFGTVFWDVGSKRASAQELFVVMGALYSACMFLGVNNSSSVQPIVSIERTVFYREKAAGMYSPIAYAAAQGLIEIPYIAVQTIVFGIITYFMINFEKTAGKFFLYLVFMFLTFTYFTFYGMMAIGLTPSQHLAAVISSAFYSLWNLLSGFLIPKASIPGWWIWFYYICPVAWTLRGIITSQLGDVETKIVGPGFEGTVKEYLSVSLGYETKINGFSSVGLSVIVLLGFIILFFGSFAVSVKILNFQKR 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2636 1089 PANTHER TYROSINE KINASE FAMILY PROTEIN 1 1089 - -
Ssu6g2636 1089 Pfam ABC-2 type transporter 810 1022 IPR013525 GO:0016020|GO:0140359
Ssu6g2636 1089 Pfam ABC-2 type transporter 160 370 IPR013525 GO:0016020|GO:0140359
Ssu6g2636 1089 Pfam ABC-2 type transporter 37 87 IPR043926 GO:0140359
Ssu6g2636 1089 Pfam Plant PDR ABC transporter associated 375 438 IPR013581 -
Ssu6g2636 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 88 IPR027417 -
Ssu6g2636 1089 Pfam ABC transporter 512 664 IPR003439 GO:0005524
Ssu6g2636 1089 PANTHER ATP-BINDING CASSETTE TRANSPORTER 1 1089 - -
Ssu6g2636 1089 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 484 736 IPR003439 GO:0005524
Ssu6g2636 1089 Gene3D - 1 108 IPR027417 -
Ssu6g2636 1089 Gene3D - 497 727 IPR027417 -
Ssu6g2636 1089 SMART AAA_5 521 713 IPR003593 -
Ssu6g2636 1089 CDD ABCG_PDR_domain2 481 719 IPR034003 -
Ssu6g2636 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 509 720 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2636 Ssu-Chr6 61479654 61492720 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2636 509 696 Calmodulin-binding Proteins AT2G36910 26.238 6.40e-06 48.5