Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2630 ATGAACCCGTTAACACTAGTGAAGCGCATTCAGAACATCAATTCGAAAGAAGCTTCACTCGGCATCGGCGAGGAAGCCTCCTGGCACGCCAAGTACAAAGAATCCGCTTACATATTCGTCGGTGGCATCCCCTTCGATCTCACCGAGGGTGACCTCCTCGCCGTTTTCGCCCAATACGGGGAGGTTGTTGATGTTAATCTCGTTAGGGACAAGGGCACCGGAAAATCCAAGGGTTTCGCGTTCCTTGCATATGAGGATCAAAGAAGCACAATTCTTGCTGTGGATAATCTGAATGGGGCACAGGTTTTGGGTAGGGTTATTAGGGTGGACCATGTTGATAAGTAtaagaagaaggaggaggaagatGAAGAGGTGGAGCGGCAGAAGAGGGAGGCGCGTGGCGTTTGTCGTGCTTTCCAAAGAGGCGAATGCACTCGTGGAGCTAGCTGCAAGTTTTCTCATGATGAGCAAAGAGCTGCGAATACAGGTTGGGGTCGTGAGGAAGACAATCCAAAATGGGGTCATGACAAATTTGAGGGTCCCAGTAAAGAGAGAAGATCTGGCAACAATCAATCAAATCATATTCCAGAAACTAGAGACAGAGATTCACGTTTGAGAGCCCGTGACAATGATACTGGATTAGACAACCAACCAAAGAGAAGTGATAGAAGAGAGAAGACAATGCAGTGgcataatgatgatgataaatttgagggaagagaaaataacaatagaagagaagaaaagagatcAAGAAGGCATGAAGATGATGAATTTGAACATAAGTCAAGAGAAGATCGATataggagagaagaaaaaagatcaAGAAGGGATAATTATGATGGTATGGAACCTGAGTCAAAGATCATCGCAGAAGGGAAGACAAGAGGTCAATAA 897 0.4103 MNPLTLVKRIQNINSKEASLGIGEEASWHAKYKESAYIFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGAQVLGRVIRVDHVDKYKKKEEEDEEVERQKREARGVCRAFQRGECTRGASCKFSHDEQRAANTGWGREEDNPKWGHDKFEGPSKERRSGNNQSNHIPETRDRDSRLRARDNDTGLDNQPKRSDRREKTMQWHNDDDKFEGRENNNRREEKRSRRHEDDEFEHKSREDRYRREEKRSRRDNYDGMEPESKIIAEGKTRGQ 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2630 298 Gene3D - 26 132 IPR012677 -
Ssu6g2630 298 SUPERFAMILY RNA-binding domain, RBD 29 118 IPR035979 GO:0003676
Ssu6g2630 298 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Ssu6g2630 298 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Ssu6g2630 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Ssu6g2630 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Ssu6g2630 298 MobiDBLite consensus disorder prediction 195 298 - -
Ssu6g2630 298 MobiDBLite consensus disorder prediction 160 184 - -
Ssu6g2630 298 Coils Coil 115 135 - -
Ssu6g2630 298 Gene3D - 133 201 - -
Ssu6g2630 298 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 280 - -
Ssu6g2630 298 MobiDBLite consensus disorder prediction 154 298 - -
Ssu6g2630 298 CDD RRM_ist3_like 27 111 IPR045844 GO:0000398|GO:0003723
Ssu6g2630 298 SMART rrm1_1 37 110 IPR000504 GO:0003723
Ssu6g2630 298 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 280 - -
Ssu6g2630 298 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Ssu6g2630 298 SUPERFAMILY CCCH zinc finger 133 155 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2630 Ssu-Chr6 61409487 61417180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2630 38 111 Eukaryotic Initiation Factors Gene Family AT4G34110 31.081 2.42e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2630 K13107 - gmx:100792988 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2630 6 61409487 61417180 Ssu6g2630 6 61409487 61417180 ECH