Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2624 ATGGATGTCACGGTAAGAGGAGGAAGTCATGGTGGTAATGGCTTTCAAATTTATGAGTGTGAAATTATAAACGCTAGCAACCCGCCTTTGGCAGCCATAGGCATAGATAGATTCTTATGTGGCCACTTCCCTCACCAGCAACAACAGGCAAGGAACAATGATGCAAGTGTTTTTTTTGCTGAGGGGGCTTGTAAGTGGACAAACATCAACCAAACCCCTACAATGTGCCTGAAAGATATGCAAGTTTTTGGAAAGAATGCGAAAGTGGTGGGAAGGAGACGCAAGAAACAGTCTTCTGTGTCTTGGATCAAAGGACAGTGGAACAAGGAAGAGGACAGGAAACTGATAAGGTTGGTGAAGCAATATGGTGAAAGAAAATGGGCTGAAATAGCCGAGAGGTTAGAGGGAAGGGTTGGCAAGCAGTGTAGAGAAAGATGGAATAATCATTTGCGTCCTGATATCAAGAAAGATAGTTGGagtgaagaagaagagaggaTATTAGTAGATACCCATTCGAGGCTCGGAAATCGTTGGTGCCAGATAGCAAAACTTATTCCAGGAAGATCAGAGAATGCCATAAAGAACCATTGGAATGCCACCAAAAGGAGACAGAATTCAAGGAGAAAGAACAAGAAGACAAAGAACTCTAATGGAAAACCACATTCCTCTATACTCGAAGACTATATCAGAAGCAAGACTCAAATTAGCAGCAACCCCACACCCGGCGTCATCACTGCCACAACTAGCTCCCACACAACACTCCCACAGGCCAATGCAGCAAACCCTTTAAACCCTGTGTTGTCTGAACCTTTTGCTGATGAACTACTCTTCATGCAACAAATTTTCATGGATAATCAGAGTCAGAGATCACTTGGCAATGTTGAAGCCTCTAAACTCTCCAAGATGTCTCCAACCTCATGCTTTGATTATTGTCAAACGAATGTTGATGATGTGGGTGAGTGTGGATATGTGTATTCCCTCCAATACCCAGATAGCGTGCACTTGAATGATAGTCTCCTCCCTAGAGAGACTCATCCTACCCCCTTAAGTTACCTTCCTTCGGATCTCTATCTCTCGCACTTGTTCAACGTAGCACCCGGTTATGGGAATCAAAGTCTGAACATAGATTTTCGGCATCAAGGTTGTTCAGAAGGAAAAGGAGAGATGGATTTGATAGAGTTTGTTTCTTCCTAG 1194 0.428 MDVTVRGGSHGGNGFQIYECEIINASNPPLAAIGIDRFLCGHFPHQQQQARNNDASVFFAEGACKWTNINQTPTMCLKDMQVFGKNAKVVGRRRKKQSSVSWIKGQWNKEEDRKLIRLVKQYGERKWAEIAERLEGRVGKQCRERWNNHLRPDIKKDSWSEEEERILVDTHSRLGNRWCQIAKLIPGRSENAIKNHWNATKRRQNSRRKNKKTKNSNGKPHSSILEDYIRSKTQISSNPTPGVITATTSSHTTLPQANAANPLNPVLSEPFADELLFMQQIFMDNQSQRSLGNVEASKLSKMSPTSCFDYCQTNVDDVGECGYVYSLQYPDSVHLNDSLLPRETHPTPLSYLPSDLYLSHLFNVAPGYGNQSLNIDFRHQGCSEGKGEMDLIEFVSS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2624 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 154 IPR017930 -
Ssu6g2624 397 SMART sant 155 203 IPR001005 -
Ssu6g2624 397 SMART sant 103 152 IPR001005 -
Ssu6g2624 397 SUPERFAMILY Homeodomain-like 101 197 IPR009057 -
Ssu6g2624 397 CDD SANT 158 201 IPR001005 -
Ssu6g2624 397 MobiDBLite consensus disorder prediction 192 224 - -
Ssu6g2624 397 ProSiteProfiles Myb-like domain profile. 151 201 IPR001005 -
Ssu6g2624 397 ProSiteProfiles Myb-like domain profile. 104 150 IPR001005 -
Ssu6g2624 397 PANTHER MYB TRANSCRIPTION FACTOR 7 379 - -
Ssu6g2624 397 CDD SANT 107 150 IPR001005 -
Ssu6g2624 397 Gene3D - 103 155 - -
Ssu6g2624 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 155 205 IPR017930 -
Ssu6g2624 397 PANTHER MYB PROTEIN-RELATED 7 379 - -
Ssu6g2624 397 MobiDBLite consensus disorder prediction 200 216 - -
Ssu6g2624 397 Gene3D - 157 223 - -
Ssu6g2624 397 Pfam Myb-like DNA-binding domain 107 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2624 Ssu-Chr6 61350755 61352411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2624 16 396 MYB Transcription Factor Family AT5G11050 37.915 4.65e-76 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu6g2624 Myb_DNA-bind_6 2.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2624 K09422 - gmx:102666818 540.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2624 6 61350755 61352411 Ssu6g2624 6 61350755 61352411 ECH