Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2614 ATGAAGTGGGAAACTATAACCCTCTCTCCTGCACCTTCTACTCCCAACTCCAACACCAGTTGGTTGGTGGAAGATAATAGGAGCACAAAATGGACCCCTGAAGAGAACAAGCTGTTTGAGAATGCTCTTGCAGTGCATGATAAGGACACCCCAGATCGGTGGCACAAAGTGGCTGAAATGATTCCAGGAAAGACTGTAGGGGATGTGATCAGGCAGTACGAGGAGTTGGAAGCGGATGTTAGCAATATAGAAGCTGGGTTGATCCCAGATCCTGGCTATAGTACTGCCACCTCACCACCCTTCACCTTAGATTGGGTGAACACTCCTGGTTATGATGGGTTTAAAGGAAGTGGTAAGAGATCTTCCTCAGTGAGACCTCATGAGCAGGAAAGGAAGAAAGGAGTGCCTTGGACTGAAGAGgaacataaATTGTTTCTACTGGGTCTGAAGAAGTATGGGAAAGGTGATTGGAGAAATATTTCTCGCAATTTTGTGATTACTAGAACCCCAACACAGGTTGCCAGCCATGCTCAGAAGTACTTCATAAGGCAACTTTCAGGAGGCAAAGACAAGAGGAGGGCTAGCATACATGACATAACAACAGTGAATCTCACTGAAACCACCACAACTTCTTCGTCAGAAGACACCAATAGATCCACTTCACCACATGTGCTCTCACAGCAGCAGCCAAATTCTACTGCCACTACACCCACAACTCATTTTCAGTGGAGCAATCAGTCAAACACAGGAGTAGCTATGACTCTCAATCCTGCTAATGAAAGAGTCTTCATGTCTCCTTATGGTGCTAACTCCTTTGGGGTTAAAATGCAGGGACAGAATCTGCACAAGACTGCTCTTCATGAGTCTTCTTACTTGGGACCTCAGGCACAGAACATGGTTTTCCAAATGCAACCGTCTTCACAACACTAG 930 0.4559 MKWETITLSPAPSTPNSNTSWLVEDNRSTKWTPEENKLFENALAVHDKDTPDRWHKVAEMIPGKTVGDVIRQYEELEADVSNIEAGLIPDPGYSTATSPPFTLDWVNTPGYDGFKGSGKRSSSVRPHEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTTTSSSEDTNRSTSPHVLSQQQPNSTATTPTTHFQWSNQSNTGVAMTLNPANERVFMSPYGANSFGVKMQGQNLHKTALHESSYLGPQAQNMVFQMQPSSQH 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2614 309 MobiDBLite consensus disorder prediction 121 135 - -
Ssu6g2614 309 Pfam Myb-like DNA-binding domain 136 181 IPR001005 -
Ssu6g2614 309 Pfam Myb-like DNA-binding domain 30 73 IPR001005 -
Ssu6g2614 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
Ssu6g2614 309 SUPERFAMILY Homeodomain-like 29 84 IPR009057 -
Ssu6g2614 309 Gene3D - 23 89 - -
Ssu6g2614 309 MobiDBLite consensus disorder prediction 116 135 - -
Ssu6g2614 309 ProSiteProfiles Myb-like domain profile. 23 77 IPR001005 -
Ssu6g2614 309 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
Ssu6g2614 309 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 132 184 IPR006447 GO:0003677
Ssu6g2614 309 MobiDBLite consensus disorder prediction 205 247 - -
Ssu6g2614 309 ProSiteProfiles SANT domain profile. 26 73 IPR017884 -
Ssu6g2614 309 ProSiteProfiles SANT domain profile. 137 185 IPR017884 -
Ssu6g2614 309 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 285 IPR043363 -
Ssu6g2614 309 MobiDBLite consensus disorder prediction 1 27 - -
Ssu6g2614 309 CDD SANT 30 76 IPR001005 -
Ssu6g2614 309 SMART sant 133 183 IPR001005 -
Ssu6g2614 309 SMART sant 27 79 IPR001005 -
Ssu6g2614 309 CDD SANT 136 181 IPR001005 -
Ssu6g2614 309 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 285 - -
Ssu6g2614 309 SUPERFAMILY Homeodomain-like 130 184 IPR009057 -
Ssu6g2614 309 Gene3D - 135 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2614 Ssu-Chr6 61232046 61233361 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu6g2614 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2614 - - gmx:778034 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2614 6 61232046 61233361 Ssu6g2614 6 61232046 61233361 ECH
Ssu6g2614 6 61232046 61233361 Ssu6g3002 6 68825856 68827288 ECH
Ssu6g2614 6 61232046 61233361 Ssu4g2324 4 55633064 55634602 ECH
Ssu6g2614 6 61232046 61233361 Ssu9g1184 9 44216496 44217845 ECH
Ssu3g1163 3 27659451 27660840 Ssu6g2614 6 61232046 61233361 ECH
Ssu4g2324 4 55633064 55634602 Ssu6g2614 6 61232046 61233361 ECH