Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2605 ATGAAGAAAACTCCGCCCCTCAATTTGCATCAATCTAGCCAAAGACAGCAGAATGCTAATCTCCAACTTGTTGGTACAAACAATGGCACAAGGAGGCCAAATCCTAAGACTAATTCCGCACTCAAATCTTTCAAGTATGCTGTCAAGAAATGTGCAGCTGTTTTTTCGTTGTTTATCTCTGGCAAAAGAAAAACAGCCTCAAATGTTGAAAATGATGAGAGAAAGGAGACATTCAAAGTCAGAGGGGTGGTATCATCATCAACTGATTTATCATCCGAAAGTAACACCAAGAATTCATCAAAATGGAAGTTTTCTTATTCCTACGCGTCATCCAGCACTGCAAGTGGACAACTTGGAATTGGCAACTTCTCCTTTGAAGAAATTTACAAGTCAACTGCAAAATTCTCTCCAGATAATGAAATTGGGCAAGGTGGCTTTGGAACAGTCTACAAGGGAAAGCTTAATGATGGATCTCTTGTCGCCGTGAAGCGTGCTAAGAAGGATGTAATACAGAATCACGTACATGAGTTCAAGAATGAAATATACACCTTGTCACAAATTGAGCATCGGAATCTTGTGAGGTTGTATGGATATTTGGAGCATGGAGATGAGAAGATTATTGTTGTTGAATATGTTGGTAATGGTAACCTTCGAGAACATCTAGATGGTATTAGGGGAGAAGGACTAGAAATGGGGGAGCGTCTAGACATAGCAATTGATGTAGCTCATGCAATAACTTACCTTCATATGTACACAGATAATCCAATTATCCATAGAGACATCAAAGCATCAAACATCTTAATCGCTGAGAACCTAAAGGCCAAAGTGGCAGATTTTGGTTTTGCACGGTTGTCTGATGATCCTACTGCAACTCATATTTCAACTCAAGTTAAAGGAACAGCAGGATACATGGATCCCGAGTATCTTAGAACCTATCAACTCACTGAAAAGAGTGATGTTTATTCCTTTGGTGTATTGCTTGTTGAAATGATGACAGGAAGACATCCAATAGAACCAAAGAGACCTATTGATGAGAGAGTGACAATCAGATGGGCAATGAAGATGCTGAAACAAGGGGATGCTGTATTTGCCATGGACCCTAGGCTGAGAAGAAATCCAGCCTCCATCAAGGCAGTAAAGAAGGTTCTCAAGCTAGCTCTCCAATGCGTTGCTCCTTCAAAACAATCACGGCCACCTATGAAGAATTGTGCAGAGGTTCTGTGGGACATCCGTAAAAGTTTTAGAGATGAGGTCAATTCCGAAAATCCTGCCCTTCCTTCTCACCATTCTGCAAATTTTcctcaaagagaaaaaaataagcataCGATGTTTGGTATTGAAGATGATGACAACTATAAATTTGTCTCCGTACCTAATcatattcattcataa 1392 0.3922 MKKTPPLNLHQSSQRQQNANLQLVGTNNGTRRPNPKTNSALKSFKYAVKKCAAVFSLFISGKRKTASNVENDERKETFKVRGVVSSSTDLSSESNTKNSSKWKFSYSYASSSTASGQLGIGNFSFEEIYKSTAKFSPDNEIGQGGFGTVYKGKLNDGSLVAVKRAKKDVIQNHVHEFKNEIYTLSQIEHRNLVRLYGYLEHGDEKIIVVEYVGNGNLREHLDGIRGEGLEMGERLDIAIDVAHAITYLHMYTDNPIIHRDIKASNILIAENLKAKVADFGFARLSDDPTATHISTQVKGTAGYMDPEYLRTYQLTEKSDVYSFGVLLVEMMTGRHPIEPKRPIDERVTIRWAMKMLKQGDAVFAMDPRLRRNPASIKAVKKVLKLALQCVAPSKQSRPPMKNCAEVLWDIRKSFRDEVNSENPALPSHHSANFPQREKNKHTMFGIEDDDNYKFVSVPNHIHS 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2605 463 CDD STKc_IRAK 141 407 - -
Ssu6g2605 463 Pfam Protein tyrosine and serine/threonine kinase 138 407 IPR001245 GO:0004672|GO:0006468
Ssu6g2605 463 PANTHER OS02G0821400 PROTEIN 1 445 - -
Ssu6g2605 463 ProSitePatterns Protein kinases ATP-binding region signature. 141 167 IPR017441 GO:0005524
Ssu6g2605 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Ssu6g2605 463 ProSiteProfiles Protein kinase domain profile. 135 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2605 463 Gene3D Phosphorylase Kinase; domain 1 93 211 - -
Ssu6g2605 463 SUPERFAMILY Protein kinase-like (PK-like) 116 408 IPR011009 -
Ssu6g2605 463 SMART serkin_6 135 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2605 463 Gene3D Transferase(Phosphotransferase) domain 1 212 430 - -
Ssu6g2605 463 PANTHER OS01G0253100 PROTEIN 1 445 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2605 Ssu-Chr6 61103467 61107324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2605 107 400 Receptor kinase-like Gene Family AT1G79620 45.183 2.26e-74 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Ssu6g2605 PK_Tyr_Ser-Thr 3.9e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2605 - - gmx:100811511 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2605 6 61103467 61107324 Ssu6g2605 6 61103467 61107324 ECH