Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2602 ATGGGTTACTTATGTGATTTTTGTGGAGATCAGAGGTCCTTGGTGTACTGCCGCTCTGATGCTGCGTGCTTATGTTTATCGTGTGATCGAAATGTTCATTCTGCTAATGCCCTTTCTAGGCGTCATTCGAGAACCCTGGTGTGCGAGAGATGTAATTCACATCCTGCATTTGTGAGGTGTGTTGAAGAGAAAATCTCACTTTGTCAGAACTGTGATTGGCTGGGCCATGGTACCTCGCCGTCTTCTTCGACACACAAGAGGCAAACAATCAATTGCTACTCTGGCTGCCCTTCAGCTGCAGAATTTTCTTCAATATGGTCCTTTTTCTTAGATATCCCTTCTATGGGTGAAGCATGTGAGCAGGAACTAGGTTTGATGAGCATTAATGAGAACAGCAACAAGAGTGCTTGGGTTCCTCCAGAAGGCCAGAATGTGTCTGGTTCGGCTCAAGTGGCTGATCTACCCGGCAAGGATAAATCTTGGGCTGGCACATCTTCAATACCCGAGTTGAGCTCAGAACCGCGTATTCTGGACCAGCCACCTGGACCTATGCCCAAGTTATACTGTCCTGGTAAGAAAGTTTCTGGACTATGTGAAGATGATAATCTATACGATGATTTCATCATGGATGAAGTGGATCTAGAACTTGAGAACTATGAGGAACTTTTTGGTATGGCTCTCAGTCACTCTGAAGAGCTTTTTGAAAATGGTGGAATTGATAGCTTGTTTGACACAAAGGACATGTCTGCTAGTGCTGGTGATTCCCATTGTCAGGGTGCTGTTGCTGCTGAGGGATCGTCTGCTCACTCTGCTGGGTTGGTCAATGCTATGCGACCAGCATGCAGCAATGCAGCATCTGCCGATTCAATGTTGAGTACAAAAACTGAACCAATTGTTTGTCTTACGGCAAGGCAATCTCAAtcaaacatttctttttctggTGTTACCAAAGATAGTGCTGGTGACTATCAAGACTGTGGTGCATCTTCAATGCTTCTCATGGGAGAGCCTCCCTGGTGCCCTCCTTGCCCTGAGAGTTCTCTGCAATCTGCTAACCGCAGCAATGCTGTCATGCGctataaggaaaagaaaaagacccGGAAGTTCGAGAAGAAAGTAAGGTATGCCTCTCGCAAGGCTAGGGCTGATGTCAGGAGGCGCGTGAAAGGCCGGTTTGTTAAAGCTGGTGATGTCTATGACTATGACCCTTTGAGCCAAACCAGAAGCTACTGA 1233 0.4526 MGYLCDFCGDQRSLVYCRSDAACLCLSCDRNVHSANALSRRHSRTLVCERCNSHPAFVRCVEEKISLCQNCDWLGHGTSPSSSTHKRQTINCYSGCPSAAEFSSIWSFFLDIPSMGEACEQELGLMSINENSNKSAWVPPEGQNVSGSAQVADLPGKDKSWAGTSSIPELSSEPRILDQPPGPMPKLYCPGKKVSGLCEDDNLYDDFIMDEVDLELENYEELFGMALSHSEELFENGGIDSLFDTKDMSASAGDSHCQGAVAAEGSSAHSAGLVNAMRPACSNAASADSMLSTKTEPIVCLTARQSQSNISFSGVTKDSAGDYQDCGASSMLLMGEPPWCPPCPESSLQSANRSNAVMRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAGDVYDYDPLSQTRSY 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2602 410 CDD Bbox1_BBX-like 4 47 - -
Ssu6g2602 410 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Ssu6g2602 410 ProSiteProfiles CCT domain profile. 353 395 IPR010402 GO:0005515
Ssu6g2602 410 SMART bboxneu5 4 47 IPR000315 GO:0008270
Ssu6g2602 410 SMART bboxneu5 48 90 IPR000315 GO:0008270
Ssu6g2602 410 CDD Bbox1_BBX-like 47 90 - -
Ssu6g2602 410 MobiDBLite consensus disorder prediction 142 183 - -
Ssu6g2602 410 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 410 - -
Ssu6g2602 410 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 410 - -
Ssu6g2602 410 Pfam CCT motif 353 395 IPR010402 GO:0005515
Ssu6g2602 410 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2602 Ssu-Chr6 61075065 61079594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2602 1 410 C2C2-CO-like Transcription Factor Family AT3G07650 55.164 2.90e-149 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Ssu6g2602 CCT 2.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2602 - - gmx:100783016 745.732