Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2600 ATGGGCCTCTCAAGTCTCCCAGCACCATCTGAAGGAGTATTATGTGTCCTTCTGGTGAACACTGTATTGTCAATTTCCATATTTAAGGGCATTGTTAGGACCATCCTCCACATTGTTGGTATCCATCTTTCATCATCCCCCACTTCACCCTCTTCACCAGATCCCTCTCAAACCCCACCCGAGTCATTTGAATTGCATCTTAGTCCCTCTGAGAGATACATTGAAGAGTTTAGAAGCCGGACGCCAACACTAAGGTTTGACAGTGTGTGTTGCTGTAAACGACCTGAACATGACTGCCCTGTGTGTCTCACTCAGTTTGAACTCGAATCGGAGATAAACCGCTTATCGTGCGGCCATCTCTTCCATAAAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACGTTACGTGCCCACTTTGCAGGACTCCCTTGATGCCTGAAGATGACACACCTTGCTTTCAGTAA 465 0.4731 MGLSSLPAPSEGVLCVLLVNTVLSISIFKGIVRTILHIVGIHLSSSPTSPSSPDPSQTPPESFELHLSPSERYIEEFRSRTPTLRFDSVCCCKRPEHDCPVCLTQFELESEINRLSCGHLFHKVCLEKWLDYWNVTCPLCRTPLMPEDDTPCFQ 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2600 154 SMART ring_2 99 140 IPR001841 -
Ssu6g2600 154 Pfam Ring finger domain 98 141 IPR001841 -
Ssu6g2600 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 149 IPR013083 -
Ssu6g2600 154 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Ssu6g2600 154 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 152 - -
Ssu6g2600 154 PANTHER - 1 152 IPR044249 -
Ssu6g2600 154 SUPERFAMILY RING/U-box 98 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2600 Ssu-Chr6 61064797 61065261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2600 1 148 C3H Transcription Factor Family AT2G04240 62.987 1.21e-57 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2600 K16285 - gmx:100786803 292.737