Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2597 ATGGGAGAGGGAGAGAACATAGAAGTAGAAGTAGAAACAGAAACAGAATCAGAAGCATCATCATCGACATGGAACCTGGGAAAACACGCTCAGATAATTGAGCTGTCGGAGAAGCTAACGAAGGGGAGCCTGAACGCCAAGATTGAGGCTGCGAGGGGGATAAGGAAGATGGTTCGGAaatcgtcgtcgtcgtcgtcgaaGACGCGTGCGAAATTCGCCGCGGCGGGTGTGATTGAACCGCTCGTGCTCATGCTCTCTTCTTCCAACATCGACGCTCGTCAGTCCTCGCTCCTCGCTCTCCTCAACCTCGCCGTTCGCAACGAACGAAACAAGGTCAAAATAGTGACAGATGGTGCCATGCCTCCACTGGTGGAGCTCCTCAAGATGCAAAATAGTAGTATACGAGAATTAGCTACGGCTGCAATCTTGACACTCTCAGCTGCTGCACCCAACAAGCCCATCATTGCTGCTTCTGGAGCAGCACCTCTCCTTGTTCAGATTCTCAAATCTGGAAGCGTTCAAGGCAAAGTTGATGCTGTTACAGCTCTCCATAATCTTTCTACTAGCATCGAGAATTCCACCGAACTTCTTGATGCTAGTGCTGTTTTCCCTCTGATCAACCTCCTTAAAGATTGCAAGAAGTATTCCAAGTTTGCAGAAAAAGCCACAGCACTAATTGAAATCCTTTCCAACTCTGAAGAAGGACGAACCGCAATCTCAATTGCAGATGGTGGAATCTTGACGCTGGTAGAGACAGTTGAAGACGGATCACTTGTCAGCACAGAGCATGCTGTTGGAACTCTGCTATCATTATGTCTAAGCAGCCGAGATAAATACCGGGAACTGATTCTTAAAGAAGGAGCGATTCCGGGTCTGTTACGTCTGACAGTGGAGGGCACAGCTGAAGCTCAAGATAGAGCCCGTGTGCTTCTGGATTTGCTCAGAGATTCTCCCCCGCAAAAAAGACTAACCTCTTcagttttgaagaaaattgtTTATGACATTGCTGAACGGGTAGATGGAGCAGATAAAGCTGCTGAAACTGCTAAACGTTTGTTGCAAGATATGGTTCAAAGGAGTATGGAACACAGCATGAAATGCATCCAGCATAGGGCTGCATCTTGTACTCCTTCTGTGATTCCATCCACTTGA 1152 0.4601 MGEGENIEVEVETETESEASSSTWNLGKHAQIIELSEKLTKGSLNAKIEAARGIRKMVRKSSSSSSKTRAKFAAAGVIEPLVLMLSSSNIDARQSSLLALLNLAVRNERNKVKIVTDGAMPPLVELLKMQNSSIRELATAAILTLSAAAPNKPIIAASGAAPLLVQILKSGSVQGKVDAVTALHNLSTSIENSTELLDASAVFPLINLLKDCKKYSKFAEKATALIEILSNSEEGRTAISIADGGILTLVETVEDGSLVSTEHAVGTLLSLCLSSRDKYRELILKEGAIPGLLRLTVEGTAEAQDRARVLLDLLRDSPPQKRLTSSVLKKIVYDIAERVDGADKAAETAKRLLQDMVQRSMEHSMKCIQHRAASCTPSVIPST 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2597 383 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 76 118 IPR000225 GO:0005515
Ssu6g2597 383 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 118 160 IPR000225 GO:0005515
Ssu6g2597 383 MobiDBLite consensus disorder prediction 1 15 - -
Ssu6g2597 383 Pfam Armadillo/beta-catenin-like repeat 107 146 IPR000225 GO:0005515
Ssu6g2597 383 Pfam Armadillo/beta-catenin-like repeat 150 187 IPR000225 GO:0005515
Ssu6g2597 383 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 200 244 IPR000225 GO:0005515
Ssu6g2597 383 SMART arm_5 232 273 IPR000225 GO:0005515
Ssu6g2597 383 SMART arm_5 189 231 IPR000225 GO:0005515
Ssu6g2597 383 SMART arm_5 106 147 IPR000225 GO:0005515
Ssu6g2597 383 SMART arm_5 65 105 IPR000225 GO:0005515
Ssu6g2597 383 SMART arm_5 148 188 IPR000225 GO:0005515
Ssu6g2597 383 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 14 349 - -
Ssu6g2597 383 PANTHER U BOX DOMAIN-CONTAINING 14 349 - -
Ssu6g2597 383 SUPERFAMILY ARM repeat 36 331 IPR016024 -
Ssu6g2597 383 MobiDBLite consensus disorder prediction 1 23 - -
Ssu6g2597 383 Gene3D - 12 378 IPR011989 -
Ssu6g2597 383 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2597 Ssu-Chr6 61016496 61021991 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2597 30 316 U-box Gene Family AT3G54790 38.542 4.76e-39 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2597 K08332 - gmx:100782472 619.772