Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2588 ATGGGTGCCGTGGTGGAGTGTTACCCGCCGCCGCGCACGGCGGTGCTGTCCCTCAACACGTTGCCGTTAGGGTTCCGTTTCCGTCCCACCGATGAAGAGCTTATCGATTACTACCTGCGCTCGAAGATCAACGGAAATGGCGACGACGTTTGGGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGATTTGCCtgATTTGTCAGTGGTACGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCGCAGGACCGGAAGTATCCGAACGGGCACAGGTTGAACCGAGCTACGAATCATGGGTATTGGAAGGCGACGGGGAAGGATCGAAAGATTAAGTCTGGCTCCACCTTGATTGGAATGAAGAAGACTCTGGTTTTCTATACTGGTCGTGCTCCCAAGGGGAAGAGGACCAATTGGGTTATGCATGAGTACAGGCCTACCCTGCAGGAGCTTGATGGTACCAATCCTGGACAGAATCCATATGTCCTTTGTCGATTATTTAAGAAACAGGATGAGAGTCTGGAAGGTTCAAACGGTGATGATGTGGACCGGACTGCTTCAACTCCTACGACTGCCAATTACTCTCCGGATGAAATACAATCTGATTCAGCTCTGCTTCCAGCGTCTTCCTCACAGGTTACTGAAGATGATAAGCCTCAGCTAGCAGTTATCACCGAGAACTCCGAGGAAGCAATATCCAACATTATAAACCCTGTTGATTGCCATAGTGATGGATGTGATGCTCCTAATGCACAAAATCTAATTGTAGAACCAGCTGGAGAGGAGTATCAGATGTTGAATGTGGACATATTTTATGACCCAGCAAATCTGCAATTGGATGACAAATTATTCTCCCCTGTCCATGCGCATTTCCCACCAGAAATTTATTATCAAGCTAACAATCAATCAGAACTTCAGTATGGTACAAATGAGACAAATATTTCAGATTATTTTGACTTGGATGCGTTCTCTTATGATACCAGCAGTCTAGAGCTGAGCTCATCCTTGCTTAATGTTAAGGACAATGGATCAAGCAGTGACTCAGATGTGGAAATGGCCAATATGACGCATCTGCAAGCACTACATGATTATCCTAAGGAGGCAGCTGAGCAGAATAGCAATTTTGGATTATTTCAGAACAATCCCGAGATGGCCTTCCCAAATAATGGTAATATGGGCCAAGTGCACAATGTGGTCAACAATTGTGAGCAACCAAGAAACTTTGATGCGTTTGTTAATGGTGATACTGGAATCAGAATAAGGACTCGTCTAGGACGAAATGAGCAGCCAAACATGAATGCGATGGTACAATTGCAAGGTAATGCACCAAGGAGAATACGATTGGGAGTTGTTAGGCCTCCGCTTGGTTCTCATGAGACAGCAAAAGATGGGAGTTGTGCTTGTGCCCCAGAAGACCATAATTCAAAAACCATCATTACTAGGGAGAGGGAAGCTTTAGAATACCATGCTGTGGACGAGAGTTCCGATGTTACTAGTGATGTGGATGAAACAGAGAAGGTATCTCCTGAGTCAGCAGCCAATTCAAGAAAGATATGTCAGCAACCTGTTGCAACTGCAGAATCCTTCTCAGGGTCGAAAGACCTATTGAGCAGAAGGGGCCACTACACATCAAAGGTTTACTCCAACCATGCCATGTGGTCTTATGTTCTTGCAGTTTCTGCCATTGTATTGGTCTCAGTAATACTCCTTGTTAATATATGGGGATATGTCAGATCGTAA 1746 0.4536 MGAVVECYPPPRTAVLSLNTLPLGFRFRPTDEELIDYYLRSKINGNGDDVWVIREIDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRATNHGYWKATGKDRKIKSGSTLIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLQELDGTNPGQNPYVLCRLFKKQDESLEGSNGDDVDRTASTPTTANYSPDEIQSDSALLPASSSQVTEDDKPQLAVITENSEEAISNIINPVDCHSDGCDAPNAQNLIVEPAGEEYQMLNVDIFYDPANLQLDDKLFSPVHAHFPPEIYYQANNQSELQYGTNETNISDYFDLDAFSYDTSSLELSSSLLNVKDNGSSSDSDVEMANMTHLQALHDYPKEAAEQNSNFGLFQNNPEMAFPNNGNMGQVHNVVNNCEQPRNFDAFVNGDTGIRIRTRLGRNEQPNMNAMVQLQGNAPRRIRLGVVRPPLGSHETAKDGSCACAPEDHNSKTIITREREALEYHAVDESSDVTSDVDETEKVSPESAANSRKICQQPVATAESFSGSKDLLSRRGHYTSKVYSNHAMWSYVLAVSAIVLVSVILLVNIWGYVRS 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2588 581 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 16 435 - -
Ssu6g2588 581 MobiDBLite consensus disorder prediction 495 520 - -
Ssu6g2588 581 Gene3D NAC domain 30 175 IPR036093 GO:0003677|GO:0006355
Ssu6g2588 581 MobiDBLite consensus disorder prediction 175 203 - -
Ssu6g2588 581 Pfam No apical meristem (NAM) protein 22 147 IPR003441 GO:0003677|GO:0006355
Ssu6g2588 581 MobiDBLite consensus disorder prediction 182 203 - -
Ssu6g2588 581 MobiDBLite consensus disorder prediction 495 512 - -
Ssu6g2588 581 ProSiteProfiles NAC domain profile. 21 171 IPR003441 GO:0003677|GO:0006355
Ssu6g2588 581 SUPERFAMILY NAC domain 14 171 IPR036093 GO:0003677|GO:0006355
Ssu6g2588 581 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 16 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2588 Ssu-Chr6 60854469 60857919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2588 14 450 NAC Transcription Factor Family AT4G35580 44.248 4.39e-97 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu6g2588 NAM 4.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2588 - - gmx:100778903 947.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2588 6 60854469 60857919 Ssu1g2727 1 73312889 73313781 PCT