Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2587 atgaaagttaTGAGCTTTTCTGGTACCATAACAAAACCCAGTTTTTTGATTGGCCAAACAGAAATGCCTATTCTAACATTTGGTCATTGTAAGTTGAGTGCTACCCTAGCTCCTCGGTTGCCTCGTGACTGCATTAGGAGGATGGGGTTGATTACGAGACTTCAATATTCTGTTGCTGATAGGACATTGACTTCGGGTTCCGTGGATTTGCCAGTGTCCAAAACAGACTCTGGTCGAGTGAATCGGAGGCGGGGAGGCTCCCCATCGCTATATAGCCGTCCTAGTTTATCAGAAATGAAGAAAGAGAAGGCGGCGATAAGGGAAAAGGTTTATGAGTTCTTGAGGACAATTGGCATTGTTCCTGATGAGCTTGATGGTCTTGAACTTCCTGTGACTGTTGATGTTATGAGGGAGCGTGTAGATTTTCTTCATAGTTTGGGGCTTACAATTGAAGACATCAACAACTATCCACTTGTTCTTGGCTGCAGCGTCAAGAAGAACATGATTCCTGTGCTTGATTACCTTGGTAAATTGGGAGTGAGGAAATCCACGATTACGCAGTTCTTGCAGAGATACCCACAAGTGCTCCATGCTAGTGTGGTTGTGGATCTTAAACCGGTGGTCAAGTATCTTATGGGGATGGATATCAAGCCTGATGATATTCCTCGTGTTCTTGAGAGGTACCCTGAAGTGCTTGGATTCAAACTTGAGGGAACCATGAGCACATCGGTTGCTTATTTGACGGGAATTGGTGTaggaagaagagaaattggaGGTGTCTTAACTAGATACCCAGAGATTTTGGGGATGCGGGTTGGTAGAATCATCAAGCCTTTTGTGGAATATCTGGAAAGCTTGGGAATTCCAAGGTTAGCCATTGCTAGACTGATAGAGCAACGACCTTATATTCTTGGATTTGGGCTGGACGAGAAGGTGAAGCCAAATGTTAAATCCCTTGAAGAGTTTAATGTTAGGCGAACATCACTTCCGTCTATAATTGCTCAGTATCCTGACATCATTGGAACTGACTTAAATTCAAAGCTTGTCAATCAGAGAAGCTTACTCAATTCTGTACTTGATTTAGATCCTGAGGACTTTGGCCGAGTTGTTGAGAAGATGCCACAGGTAGTTAACCTCAGCAGTGGACCTATGCTGAAGCATGTTGATTTTCTTAAGGATTGTGGGTTTTCCTTGCTGCAAATGAGGAAGATGATTGTTGGATGCCCTCAATTACTTGCTTTAAACATTGACATTATGAAACTTAGCTTTGGTTACTTCCAAACGGAGATGAAAAGGCCTTTGGAAGACTTGGTTACTTTCCCTGCATTCTTCACCTATGGTTTGGAGTCAACTATAAAACCTAGGCATATGATGGTTGTCAAGAAAGGGTTGAAGTGTTCTCTGTCATGGATGCTTTATTGTTCTAATGAGAAATTTGAGCAACGAATGGACTATGACACTATTGACATGGAAGAGATGGAAATGGAACCATCATTTGACATGAATTCACTGACGCAACCAAGGAGTGATGAATCAGATTTTGATTATGAAGACAGTGATGAAGATAATGAGTAG 1575 0.4165 MKVMSFSGTITKPSFLIGQTEMPILTFGHCKLSATLAPRLPRDCIRRMGLITRLQYSVADRTLTSGSVDLPVSKTDSGRVNRRRGGSPSLYSRPSLSEMKKEKAAIREKVYEFLRTIGIVPDELDGLELPVTVDVMRERVDFLHSLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTITQFLQRYPQVLHASVVVDLKPVVKYLMGMDIKPDDIPRVLERYPEVLGFKLEGTMSTSVAYLTGIGVGRREIGGVLTRYPEILGMRVGRIIKPFVEYLESLGIPRLAIARLIEQRPYILGFGLDEKVKPNVKSLEEFNVRRTSLPSIIAQYPDIIGTDLNSKLVNQRSLLNSVLDLDPEDFGRVVEKMPQVVNLSSGPMLKHVDFLKDCGFSLLQMRKMIVGCPQLLALNIDIMKLSFGYFQTEMKRPLEDLVTFPAFFTYGLESTIKPRHMMVVKKGLKCSLSWMLYCSNEKFEQRMDYDTIDMEEMEMEPSFDMNSLTQPRSDESDFDYEDSDEDNE 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2587 524 MobiDBLite consensus disorder prediction 496 524 - -
Ssu6g2587 524 Pfam mTERF 172 480 IPR003690 GO:0003690|GO:0006355
Ssu6g2587 524 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF4, CHLOROPLASTIC 66 513 - -
Ssu6g2587 524 MobiDBLite consensus disorder prediction 69 94 - -
Ssu6g2587 524 Gene3D Transcription termination factor 3, mitochondrial 277 489 IPR038538 -
Ssu6g2587 524 Gene3D Transcription termination factor 3, mitochondrial 151 276 IPR038538 -
Ssu6g2587 524 SMART mt_12 330 362 IPR003690 GO:0003690|GO:0006355
Ssu6g2587 524 SMART mt_12 367 397 IPR003690 GO:0003690|GO:0006355
Ssu6g2587 524 SMART mt_12 186 217 IPR003690 GO:0003690|GO:0006355
Ssu6g2587 524 SMART mt_12 222 253 IPR003690 GO:0003690|GO:0006355
Ssu6g2587 524 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Ssu6g2587 524 SMART mt_12 402 433 IPR003690 GO:0003690|GO:0006355
Ssu6g2587 524 SMART mt_12 434 465 IPR003690 GO:0003690|GO:0006355
Ssu6g2587 524 SMART mt_12 294 325 IPR003690 GO:0003690|GO:0006355
Ssu6g2587 524 SMART mt_12 150 181 IPR003690 GO:0003690|GO:0006355
Ssu6g2587 524 PANTHER CGI-12 PROTEIN-RELATED 66 513 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2587 Ssu-Chr6 60833217 60834791 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu6g2587 mTERF 1.2e-106 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2587 K15032 - gmx:100785223 899.812