Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2584 ATGAGTCACACAGAGGGAGCAACCGAGGCAAAGAGGATGAGAACTTTGAAGGAGTGGTTCACATCTTCCCAGGCTCTATTGAGCATGTTGCTAGTGCAAGTTTTTGTGACTGGGATGCAGCTGCTATCAAGGGTCATATTGGTTCACGGCTCTTTCATTTGTGCACTTATTGCTTATCGTCATATTGTTGCTGCTATTTGTGTTGCCCCCTTTGCACTTTACTTTGAAAGAGGCCGCCCAAAGAAGTTCACTTGGAAGATTTGGTTTTGGCTCTTCATTAATGCATTAATGGGGATGACTCTGGCTCAAGGATTGTTCTATTATGGTCTCCGAGACACTTCAGCTACTTACTCTGCCAATTTTCTCAACTTGATTCCTATAAGCACCTTCTTTACCTCTATCATATGCAGAATGGAGAAACTGGGGTTGCAAACATGGGCTGGTAAAGCTAAGTCTATAGGGGCAATTTTGTGTGTTGGGGGAGCATTAGTTACCAGTCTTTACAAAGGGAAGGAATTTTATCTTGGTCATCATAGTCATCACGCTCAAACTGCTGTTGTAGCACACAAAACCCACATGCTTCGTGGCACTTTCTTTTTGGTTGGAAGCTGCTTCTCATACACAGCGTGGTTTATTGTGCAAgtGAAGTTACTTAAGGTATTTCCATTGAAGTATTGGGGAACAATGCTAGCATGCGTTGTGGCAGCAATTCAATCAGCAATAATAGGTGTCTTCATAGATTCCAGTAAAGCTGCTTGGAGATTGGAGTGGAATCTCCAACTGATCACTATAGTGTACTCGGGAGCACTGGCTACGGCTGCTTCATTTTGCTTACTATCCTGGGCAATTTCAGTCAAAGGGCCTACTTATCCTCCAGTGTTCAATCCACTTGCTCTTATTTTTGTGGCCTTATCTGAAGCTATCATACTTGGACAACCTTTAGGAGTTGGAACGTTGTTGGGCATGGTTTTGATCATAATGGGATTGTACTCCTTTTTGTGGGGCAAAAAGAATGACACACAGCGCTTGCCTCAACCAAATGTTGCAGTTGGAGAAGGATCGACAAGGATGGCTGATGGGCTTACTAGTGCCCAATCAACATCTACTGTCGTACCAACTGCTTCACCTACCAACACTGTGGTTCTTGAAATCGAAAAGACTGAccaaaggtga 1173 0.4314 MSHTEGATEAKRMRTLKEWFTSSQALLSMLLVQVFVTGMQLLSRVILVHGSFICALIAYRHIVAAICVAPFALYFERGRPKKFTWKIWFWLFINALMGMTLAQGLFYYGLRDTSATYSANFLNLIPISTFFTSIICRMEKLGLQTWAGKAKSIGAILCVGGALVTSLYKGKEFYLGHHSHHAQTAVVAHKTHMLRGTFFLVGSCFSYTAWFIVQVKLLKVFPLKYWGTMLACVVAAIQSAIIGVFIDSSKAAWRLEWNLQLITIVYSGALATAASFCLLSWAISVKGPTYPPVFNPLALIFVALSEAIILGQPLGVGTLLGMVLIIMGLYSFLWGKKNDTQRLPQPNVAVGEGSTRMADGLTSAQSTSTVVPTASPTNTVVLEIEKTDQR 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2584 390 PANTHER WAT1-RELATED PROTEIN 23 350 IPR030184 GO:0016021|GO:0022857
Ssu6g2584 390 PANTHER WAT1-RELATED PROTEIN 23 350 - -
Ssu6g2584 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 257 337 - -
Ssu6g2584 390 Pfam EamA-like transporter family 195 332 IPR000620 GO:0016020|GO:0016021
Ssu6g2584 390 Pfam EamA-like transporter family 26 159 IPR000620 GO:0016020|GO:0016021
Ssu6g2584 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 59 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2584 Ssu-Chr6 60768365 60776377 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2584 26 337 Nodulin-like Gene Family AT1G09380 35.737 1.23e-62 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2584 - - gmx:100782551 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2584 6 60768365 60776377 Ssu1g2724 1 73241465 73257476 PCT