Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2564 ATGGTGTTTGATTTAGGACCTGCAAGGTGTTATAGGCAAATTAAAAACAAGCCATACCCCAAGTCACGTTTCTGCCGTGGTGTTCCTGATCCCAAGATCAGAATTTATGATGTTGGTATGAAGAAGAAAGGTGTTGATGAGTTTCCTTTCTGTGTGCATCTGGTTAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTGGAAGCTGCTAGGATTGCTTGCAACAAGTACATGGCGAAATTTGCCGGAAAGGATGCATTCCACTTGAGAGTCAGGGTGCACCCATTCCATGTTCTCAGGATCAACAAGATGCTTTCGTGTGCAGGAGCTGATAGGCTCCAGACCGGCATGAGGGGTGCATTTGGAAAGCCACAGGGTACTTGTGCTAGAGTGGCTATTGGGCAGGTGCTCCTTTCTGTCCGCTGCAAGGACAGCAACAGCCATCATGCACAGGAGGCCCTTCGCCGTGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATTATAGTTAGCAGGAAATGGGGCTTCACCAAGTTTAGCCGTTCTGATTATCTCAAGTTCAAGTCAGAGAACAGAATTGTGCCTGATGGCGTGAATGCAAAGCTTCTTGGGTGCCATGGACCGTTGGCCAATCGTGAACCTGGAAGAGCCTTTTTGTCTAGTGCTACTGCTTAA 672 0.4762 MVFDLGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLKFKSENRIVPDGVNAKLLGCHGPLANREPGRAFLSSATA 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2564 223 Pfam Ribosomal protein L16p/L10e 14 168 IPR016180 GO:0003735|GO:0005840|GO:0006412
Ssu6g2564 223 ProSitePatterns Ribosomal protein L10e signature. 110 131 IPR018255 GO:0003735|GO:0005840|GO:0006412
Ssu6g2564 223 SUPERFAMILY Ribosomal protein L16p/L10e 7 175 IPR036920 GO:0003735|GO:0005840|GO:0006412
Ssu6g2564 223 CDD Ribosomal_L16_L10e 43 168 IPR016180 GO:0003735|GO:0005840|GO:0006412
Ssu6g2564 223 TIGRFAM uL16_euk_arch: ribosomal protein uL16 6 176 IPR001197 GO:0003735|GO:0005840|GO:0006412
Ssu6g2564 223 Gene3D Ribosomal protein L10e/L16 5 219 IPR036920 GO:0003735|GO:0005840|GO:0006412
Ssu6g2564 223 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 7 220 - -
Ssu6g2564 223 PANTHER 60S RIBOSOMAL PROTEIN L10 7 220 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2564 Ssu-Chr6 60417656 60418717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2564 7 222 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.111 2.05e-141 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2564 K02866 - gmx:100305619 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2564 6 60417656 60418717 Ssu1g2693 1 72870133 72871062 PCT